MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:25.7 nTPM
GTEx:10.1 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Pig:25.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
1870 Female, age 42, unknown 28.6
2019 Male, age 18, unknown 27.5
2586 Male, age 75, left hemisphere 26.6
1830 Male, age 51, unknown 26.4
2411 Female, age 72, unknown 25.6
1833 Male, age 53, unknown 24.3
1827 Male, age 72, unknown 23.5
2828 Female, age 72, unknown 21.1
2666 Male, age 74, left hemisphere 20.1
2219 Male, age 76, both hemispheres 19.3
Dorsal raphe nucleus
nTPM: 22.6
2750 Male, age 76, both hemispheres 25.5
2016 Female, age 72, unknown 23.4
2298 Female, age 72, unknown 22.4
2047 Male, age 72, unknown 21.3
1828 Male, age 53, unknown 20.5
Inferior colliculus
nTPM: 24.7
2097 Female, age 72, unknown 27.6
1848 Female, age 42, unknown 25.0
1890 Male, age 53, unknown 23.7
2849 Male, age 72, unknown 22.6
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 25.4
2502 Female, age 75, unknown 30.6
1947 Male, age 18, unknown 25.7
1795 Male, age 51, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 24.7
2850 Male, age 76, both hemispheres 25.7
1831 Male, age 72, unknown 25.0
2464 Female, age 72, unknown 24.6
1840 Male, age 53, unknown 23.5
Periaquaductal grey, lateral
nTPM: 22.9
2053 Male, age 18, unknown 24.5
2140 Male, age 76, both hemispheres 23.6
2272 Male, age 74, both hemispheres 20.6
Pretectal area
nTPM: 25.4
1817 Female, age 42, unknown 28.3
1815 Male, age 53, unknown 28.2
1816 Male, age 51, unknown 28.2
2007 Male, age 72, unknown 27.0
1944 Female, age 72, unknown 26.9
2316 Male, age 76, right hemisphere 25.6
2667 Female, age 75, unknown 24.4
2273 Male, age 74, both hemispheres 24.1
2407 Male, age 75, both hemispheres 22.8
2224 Female, age 72, unknown 21.9
2825 Male, age 18, unknown 21.5
Red nucleus
nTPM: 25.7
1821 Female, age 72, unknown 28.5
1904 Male, age 53, unknown 28.2
1954 Female, age 42, unknown 27.6
2823 Male, age 76, right hemisphere 27.5
1865 Male, age 51, unknown 26.9
2785 Male, age 18, unknown 26.6
2769 Male, age 72, unknown 25.6
2227 Male, age 72, unknown 24.9
2584 Male, age 75, left hemisphere 24.1
2503 Female, age 72, unknown 23.8
2588 Male, age 74, left hemisphere 23.0
2725 Female, age 75, unknown 22.5
Substantia nigra
nTPM: 21.7
1889 Female, age 72, unknown 27.2
2409 Female, age 72, unknown 25.4
2241 Male, age 72, unknown 22.8
2583 Male, age 75, right hemisphere 22.3
1851 Male, age 51, unknown 21.9
1941 Male, age 53, unknown 21.9
2590 Female, age 75, unknown 19.6
1916 Female, age 42, unknown 19.4
2699 Male, age 18, unknown 18.5
2665 Male, age 74, both hemispheres 18.1
Superior colliculus
nTPM: 25.6
1995 Male, age 72, unknown 27.5
2668 Female, age 75, unknown 27.2
2261 Male, age 18, unknown 27.0
1913 Female, age 42, unknown 26.9
2087 Female, age 72, unknown 25.8
1839 Male, age 51, unknown 25.2
1895 Male, age 76, right hemisphere 24.9
2664 Male, age 75, both hemispheres 24.7
1796 Male, age 53, unknown 24.5
2587 Male, age 74, left hemisphere 22.7
Ventral tegmental area
nTPM: 22.4
2223 Female, age 72, unknown 24.8
2410 Female, age 72, unknown 23.7
2021 Male, age 53, unknown 22.3
1942 Male, age 51, unknown 21.8
2218 Male, age 76, both hemispheres 21.4
1915 Female, age 42, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 18.9
Min nTPM: 6.1
Std nTPM: 2.1
Median nTPM: 9.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 18.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 15.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 14.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 13.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 13.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.3
FF:10158-103A5 76 years, female 99.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.0
Sample A Female 22.9
Sample B Female 18.0
Sample C Male 20.5
Sample D Male 23.8
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 27.0
Min nTPM: 24.4
Sample A Female 26.1
Sample B Female 24.4
Sample C Male 24.8
Sample D Male 27.0
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 22.0
Min nTPM: 16.9
Sample B Female 16.9
Sample C Male 18.7
Sample D Male 22.0
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 16.2
Sample A Female 24.2
Sample B Female 16.2
Sample C Male 29.0
Sample D Male 26.5

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