HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.0 nTPM
HPA Brain:48.9 nTPM
GTEx:37.0 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:50.2 nTPM
Allen mouse:13.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039374
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Hippocampus
nTPM: 43.4
1898 Male, age 80, left hemisphere 50.2
2529 Female, age 94, left hemisphere 45.6
2148 Female, age 91, left hemisphere 42.1
2621 Female, age 67, right hemisphere 41.5
1855 Male, age 76, left hemisphere 40.9
1911 Female, age 85, right hemisphere 39.9
Dentate gyrus
nTPM: 43.5
2010 Male, age 76, both hemispheres 50.9
2530 Female, age 94, left hemisphere 45.5
1927 Female, age 91, both hemispheres 42.3
2528 Male, age 74, both hemispheres 41.8
2246 Female, age 85, both hemispheres 40.3
2531 Female, age 67, both hemispheres 40.2
Entorhinal gyrus
nTPM: 46.4
2764 Male, age 80, right hemisphere 52.3
1787 Male, age 76, left hemisphere 50.4
1938 Female, age 85, left hemisphere 49.5
2613 Female, age 94, left hemisphere 44.6
2117 Female, age 91, right hemisphere 40.9
2686 Male, age 75, right hemisphere 40.7
Hippocampus, CA1
nTPM: 46.5
2045 Male, age 76, both hemispheres 56.6
1873 Female, age 85, both hemispheres 45.8
2082 Female, age 91, right hemisphere 45.0
2749 Male, age 80, left hemisphere 44.9
2527 Male, age 74, both hemispheres 40.1
Hippocampus, CA2
nTPM: 44.9
1892 Male, age 76, both hemispheres 52.9
1963 Male, age 80, left hemisphere 46.3
2249 Male, age 74, both hemispheres 46.2
2113 Female, age 91, right hemisphere 43.0
2437 Female, age 94, left hemisphere 41.4
1940 Female, age 85, left hemisphere 39.9
Hippocampus, CA3
nTPM: 45.7
1867 Male, age 76, both hemispheres 50.8
2620 Female, age 94, left hemisphere 48.1
2436 Male, age 74, both hemispheres 47.6
2137 Male, age 80, left hemisphere 47.1
1891 Female, age 85, both hemispheres 43.4
2861 Female, age 67, both hemispheres 37.2
Parahippocampal cortex
nTPM: 43.6
2018 Male, age 76, both hemispheres 50.7
1850 Male, age 80, both hemispheres 46.3
1933 Female, age 85, both hemispheres 45.8
2693 Female, age 94, both hemispheres 44.2
1990 Female, age 91, right hemisphere 44.1
2532 Female, age 72, left hemisphere 43.3
2250 Female, age 67, right hemisphere 42.8
2622 Female, age 67, right hemisphere 41.0
2692 Male, age 74, both hemispheres 40.1
2245 Female, age 91, both hemispheres 37.5
Perirhinal gyrus
nTPM: 48.9
1847 Female, age 91, left hemisphere 52.1
1794 Male, age 80, right hemisphere 50.6
2848 Male, age 76, right hemisphere 49.0
1841 Female, age 85, right hemisphere 48.8
2521 Female, age 94, right hemisphere 43.9
Subiculum
nTPM: 41.4
1977 Female, age 85, both hemispheres 49.5
2042 Male, age 76, both hemispheres 44.8
2619 Male, age 74, both hemispheres 43.4
1901 Male, age 80, both hemispheres 40.3
2729 Female, age 91, right hemisphere 39.6
2438 Female, age 94, left hemisphere 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.0
Samples: 197

Max nTPM: 63.9
Min nTPM: 15.9
Std nTPM: 6.7
Median nTPM: 36.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 63.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 56.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 55.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 54.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 52.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 48.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 48.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 48.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 47.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 47.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 47.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.4
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 19.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Subiculum
nTPM: 26.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 22.7
Sample A Female 32.2
Sample B Female 24.9
Sample C Male 26.1
Sample D Male 22.7
Dorsal hippocampus
nTPM: 28.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 19.6
Sample A Female 37.2
Sample B Female 29.5
Sample C Male 29.1
Sample D Male 19.6
Entorhinal cortex
nTPM: 25.5
Samples: 4

Max nTPM: 28.3
Min nTPM: 20.6
Sample A Female 27.8
Sample B Female 25.4
Sample C Male 28.3
Sample D Male 20.6
Ventral hippocampus
nTPM: 30.2
Samples: 4

Max nTPM: 37.4
Min nTPM: 21.7
Sample A Female 32.9
Sample B Female 21.7
Sample C Male 37.4
Sample D Male 28.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.8
Samples: 4

Max nTPM: 49.0
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 39.9
Sample C Female 46.7
Sample D Female 49.0
Hippocampal formation
nTPM: 50.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 45.4
Sample A Male 54.2
Sample B Male 45.4
Sample C Female 50.0
Sample D Female 51.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.1
69059977 Antisense, RP_050317_04_H10, Mouse strain C57BL/6J (56 days, male) 13.1

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