MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:17.5 nTPM
GTEx:37.1 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:23.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.2
2586 Male, age 75, left hemisphere 18.0
1870 Female, age 42, unknown 16.8
2219 Male, age 76, both hemispheres 16.5
2019 Male, age 18, unknown 16.3
1833 Male, age 53, unknown 15.9
1827 Male, age 72, unknown 15.4
1830 Male, age 51, unknown 14.7
2666 Male, age 74, left hemisphere 13.3
2411 Female, age 72, unknown 12.7
2828 Female, age 72, unknown 12.1
Dorsal raphe nucleus
nTPM: 15.5
2298 Female, age 72, unknown 18.9
2016 Female, age 72, unknown 14.9
1828 Male, age 53, unknown 14.7
2047 Male, age 72, unknown 14.5
2750 Male, age 76, both hemispheres 14.5
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 16.0
2849 Male, age 72, unknown 15.8
1890 Male, age 53, unknown 15.0
1848 Female, age 42, unknown 13.7
Median raphe nucleus
nTPM: 14.8
2220 Male, age 76, midline 14.8
Periaquaductal grey, anterior
nTPM: 13.8
2502 Female, age 75, unknown 14.9
1947 Male, age 18, unknown 13.5
1795 Male, age 51, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 14.6
1831 Male, age 72, unknown 15.5
1840 Male, age 53, unknown 14.8
2850 Male, age 76, both hemispheres 14.7
2464 Female, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 14.5
2272 Male, age 74, both hemispheres 15.5
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 13.9
Pretectal area
nTPM: 15.1
2667 Female, age 75, unknown 17.2
1815 Male, age 53, unknown 16.4
2273 Male, age 74, both hemispheres 16.4
1817 Female, age 42, unknown 15.7
1816 Male, age 51, unknown 15.3
2825 Male, age 18, unknown 15.2
2224 Female, age 72, unknown 15.0
2007 Male, age 72, unknown 14.5
1944 Female, age 72, unknown 14.3
2407 Male, age 75, both hemispheres 13.1
2316 Male, age 76, right hemisphere 12.9
Red nucleus
nTPM: 16.5
1821 Female, age 72, unknown 19.6
1865 Male, age 51, unknown 18.8
2769 Male, age 72, unknown 17.1
1904 Male, age 53, unknown 16.9
2503 Female, age 72, unknown 16.6
1954 Female, age 42, unknown 16.4
2584 Male, age 75, left hemisphere 16.1
2785 Male, age 18, unknown 16.1
2227 Male, age 72, unknown 15.9
2823 Male, age 76, right hemisphere 15.1
2725 Female, age 75, unknown 14.7
2588 Male, age 74, left hemisphere 14.5
Substantia nigra
nTPM: 17.5
2409 Female, age 72, unknown 22.3
2665 Male, age 74, both hemispheres 20.2
1851 Male, age 51, unknown 18.8
1916 Female, age 42, unknown 17.9
1941 Male, age 53, unknown 17.6
2699 Male, age 18, unknown 17.3
1889 Female, age 72, unknown 17.1
2583 Male, age 75, right hemisphere 16.7
2241 Male, age 72, unknown 14.5
2590 Female, age 75, unknown 12.4
Superior colliculus
nTPM: 15.3
2668 Female, age 75, unknown 19.1
1995 Male, age 72, unknown 17.4
1895 Male, age 76, right hemisphere 16.4
1913 Female, age 42, unknown 15.9
2261 Male, age 18, unknown 15.0
2664 Male, age 75, both hemispheres 14.9
2587 Male, age 74, left hemisphere 14.6
1839 Male, age 51, unknown 13.9
1796 Male, age 53, unknown 13.8
2087 Female, age 72, unknown 12.2
Ventral tegmental area
nTPM: 14.8
1915 Female, age 42, unknown 17.1
2223 Female, age 72, unknown 15.3
2218 Male, age 76, both hemispheres 14.5
2410 Female, age 72, unknown 14.2
2021 Male, age 53, unknown 13.9
1942 Male, age 51, unknown 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.1
Samples: 139

Max nTPM: 71.2
Min nTPM: 19.1
Std nTPM: 8.3
Median nTPM: 36.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 53.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 52.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 51.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 50.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 49.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.2
Samples: 4

Max nTPM: 22.9
Min nTPM: 13.9
Sample A Female 22.9
Sample B Female 18.0
Sample C Male 18.1
Sample D Male 13.9
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 17.1
Sample A Female 22.2
Sample B Female 17.9
Sample C Male 19.6
Sample D Male 17.1
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.6
Min nTPM: 15.9
Sample B Female 15.9
Sample C Male 18.6
Sample D Male 16.5
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 19.2
Sample A Female 21.3
Sample B Female 20.8
Sample C Male 20.1
Sample D Male 19.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 22.8
Sample A Male 23.7
Sample B Male 24.2
Sample C Female 22.8
Sample D Female 23.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
632512 Antisense, RP_040907_01_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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