BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:28.8 nTPM
HPA Brain:36.8 nTPM
GTEx:28.8 nTPM
FANTOM5:65.1 Scaled Tags Per Million
Pig:100.7 nTPM
Mouse:77.8 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049270
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.2
2846 Female, age 79, unknown 45.8
1857 Female, age 85, left hemisphere 40.7
1854 Male, age 80, left hemisphere 37.6
2290 Female, age 72, unknown 35.1
2288 Male, age 75, left hemisphere 34.7
1781 Male, age 74, unknown 31.0
2481 Female, age 94, left hemisphere 28.9
2289 Male, age 61, right hemisphere 28.0
Globus pallidus, externus
nTPM: 29.9
2395 Male, age 75, both hemispheres 37.4
2772 Female, age 79, unknown 34.9
1996 Male, age 80, right hemisphere 30.6
2567 Female, age 72, unknown 24.9
2646 Male, age 61, right hemisphere 21.7
Globus pallidus, internus
nTPM: 31.0
2287 Male, age 75, right hemisphere 41.2
2483 Female, age 94, right hemisphere 38.1
2778 Female, age 91, both hemispheres 31.1
1818 Male, age 74, unknown 30.5
2037 Male, age 80, right hemisphere 27.1
2566 Female, age 72, unknown 25.5
2111 Female, age 85, right hemisphere 23.3
Nucleus accumbens
nTPM: 36.7
1856 Female, age 91, right hemisphere 46.4
2698 Female, age 72, unknown 45.2
1806 Female, age 85, left hemisphere 38.5
1783 Male, age 74, unknown 37.7
2824 Male, age 61, right hemisphere 35.8
2286 Male, age 75, left hemisphere 33.4
2391 Female, age 94, left hemisphere 32.1
2732 Male, age 80, right hemisphere 24.4
Nucleus basalis of Meynert
nTPM: 32.4
2821 Male, age 75, both hemispheres 39.1
2393 Male, age 80, right hemisphere 33.8
2484 Female, age 94, left hemisphere 33.8
2569 Male, age 61, both hemispheres 22.9
Nucleus of the diagonal band
nTPM: 36.8
2775 Male, age 80, right hemisphere 41.9
1812 Female, age 91, both hemispheres 41.6
2195 Female, age 85, both hemispheres 38.6
2029 Male, age 61, right hemisphere 35.4
1979 Male, age 74, unknown 26.4
Putamen
nTPM: 32.6
1937 Female, age 91, right hemisphere 39.0
1838 Male, age 80, right hemisphere 37.9
2466 Female, age 79, unknown 35.7
1829 Male, age 74, unknown 31.8
2482 Female, age 94, left hemisphere 31.5
2489 Female, age 72, unknown 27.4
2647 Male, age 75, left hemisphere 25.0
Septal nuclei
nTPM: 34.8
1960 Male, age 74, unknown 50.3
2009 Female, age 91, both hemispheres 39.7
2031 Female, age 72, unknown 37.8
2629 Female, age 94, right hemisphere 36.8
2394 Male, age 61, left hemisphere 29.8
2059 Female, age 85, both hemispheres 24.8
2199 Male, age 80, right hemisphere 24.3
Stria terminalis, bed nucleus
nTPM: 29.6
1974 Female, age 91, both hemispheres 32.9
2486 Female, age 94, both hemispheres 31.6
2201 Male, age 74, unknown 24.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 43.6
Min nTPM: 13.1
Std nTPM: 5.1
Median nTPM: 23.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 43.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 40.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 39.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 39.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 37.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 37.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 36.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 34.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 56.9
Min nTPM: 13.9
Std nTPM: 6.2
Median nTPM: 28.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 56.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 52.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 44.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 43.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 43.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 40.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 39.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 39.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 38.8
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Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 38.4
Min nTPM: 11.0
Std nTPM: 5.1
Median nTPM: 24.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 38.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 38.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 36.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 36.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 36.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 36.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 35.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 34.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 34.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 33.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.4
FF:10164-103B2 76 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 37.2
FF:10037-101F1 23-56 years, mixed 37.2
Putamen
Scaled Tags Per Million: 65.1
FF:10176-103C5 60 years, female 65.1
Globus pallidus
Scaled Tags Per Million: 40.0
FF:10161-103A8 76 years, female 48.8
FF:10175-103C4 60 years, female 31.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 100.7
Pig sample Sample description nTPM
Caudate
nTPM: 72.7
Samples: 4

Max nTPM: 80.5
Min nTPM: 61.0
Sample A Female 79.1
Sample B Female 61.0
Sample C Male 80.5
Sample D Male 70.0
Putamen
nTPM: 100.7
Samples: 4

Max nTPM: 136.7
Min nTPM: 78.1
Sample A Female 104.5
Sample B Female 83.6
Sample C Male 136.7
Sample D Male 78.1
Septum
nTPM: 67.6
Samples: 4

Max nTPM: 78.0
Min nTPM: 59.4
Sample A Female 78.0
Sample B Female 66.6
Sample C Male 59.4
Sample D Male 66.2
Ventral pallidum
nTPM: 70.5
Samples: 4

Max nTPM: 79.0
Min nTPM: 62.1
Sample A Female 79.0
Sample B Female 74.5
Sample C Male 66.3
Sample D Male 62.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 77.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.6
Samples: 4

Max nTPM: 88.6
Min nTPM: 64.0
Sample A Male 72.9
Sample B Male 64.0
Sample C Female 80.9
Sample D Female 88.6
Septum
nTPM: 76.2
Samples: 4

Max nTPM: 85.7
Min nTPM: 64.6
Sample A Male 64.6
Sample B Male 85.7
Sample C Female 82.6
Sample D Female 71.8
Ventral forebrain
nTPM: 77.8
Samples: 4

Max nTPM: 83.1
Min nTPM: 73.2
Sample A Male 83.1
Sample B Male 73.2
Sample C Female 80.6
Sample D Female 74.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
68301270 Antisense, RP_041129_02_H11, Mouse strain C57BL/6J (56 days, male) 1.8
73512483 Antisense, RP_051017_02_D02, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.3
68301270 Antisense, RP_041129_02_H11, Mouse strain C57BL/6J (56 days, male) 1.4
73512483 Antisense, RP_051017_02_D02, Mouse strain C57BL/6J (56 days, male) 1.3

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