MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.1 nTPM
HPA Brain:0.5 nTPM
GTEx:0.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 0.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.4
2219 Male, age 76, both hemispheres 0.9
1827 Male, age 72, unknown 0.6
2019 Male, age 18, unknown 0.6
2666 Male, age 74, left hemisphere 0.5
1833 Male, age 53, unknown 0.4
2828 Female, age 72, unknown 0.4
2586 Male, age 75, left hemisphere 0.3
1830 Male, age 51, unknown 0.2
1870 Female, age 42, unknown 0.2
2411 Female, age 72, unknown 0.2
Dorsal raphe nucleus
nTPM: 0.5
1828 Male, age 53, unknown 0.6
2298 Female, age 72, unknown 0.6
2047 Male, age 72, unknown 0.5
2750 Male, age 76, both hemispheres 0.5
2016 Female, age 72, unknown 0.4
Inferior colliculus
nTPM: 0.4
2097 Female, age 72, unknown 0.6
1848 Female, age 42, unknown 0.4
1890 Male, age 53, unknown 0.4
2849 Male, age 72, unknown 0.4
Median raphe nucleus
nTPM: 0.5
2220 Male, age 76, midline 0.5
Periaquaductal grey, anterior
nTPM: 0.3
1795 Male, age 51, unknown 0.5
2502 Female, age 75, unknown 0.5
1947 Male, age 18, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 0.3
1831 Male, age 72, unknown 0.6
2464 Female, age 72, unknown 0.6
1840 Male, age 53, unknown 0.2
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.5
2272 Male, age 74, both hemispheres 0.7
2053 Male, age 18, unknown 0.4
2140 Male, age 76, both hemispheres 0.4
Pretectal area
nTPM: 0.5
1816 Male, age 51, unknown 1.1
2273 Male, age 74, both hemispheres 0.9
1817 Female, age 42, unknown 0.7
2007 Male, age 72, unknown 0.7
1944 Female, age 72, unknown 0.5
2316 Male, age 76, right hemisphere 0.4
2407 Male, age 75, both hemispheres 0.4
2667 Female, age 75, unknown 0.4
2825 Male, age 18, unknown 0.4
2224 Female, age 72, unknown 0.3
1815 Male, age 53, unknown 0.2
Red nucleus
nTPM: 0.4
2503 Female, age 72, unknown 0.6
2769 Male, age 72, unknown 0.6
2785 Male, age 18, unknown 0.6
1865 Male, age 51, unknown 0.5
2584 Male, age 75, left hemisphere 0.5
1954 Female, age 42, unknown 0.4
2227 Male, age 72, unknown 0.4
2823 Male, age 76, right hemisphere 0.4
1904 Male, age 53, unknown 0.3
2588 Male, age 74, left hemisphere 0.3
2725 Female, age 75, unknown 0.3
1821 Female, age 72, unknown 0.2
Substantia nigra
nTPM: 0.4
1941 Male, age 53, unknown 0.6
2583 Male, age 75, right hemisphere 0.6
1889 Female, age 72, unknown 0.5
1916 Female, age 42, unknown 0.5
2590 Female, age 75, unknown 0.5
2665 Male, age 74, both hemispheres 0.5
1851 Male, age 51, unknown 0.3
2699 Male, age 18, unknown 0.3
2241 Male, age 72, unknown 0.1
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 0.4
1796 Male, age 53, unknown 0.7
2261 Male, age 18, unknown 0.7
2587 Male, age 74, left hemisphere 0.7
1913 Female, age 42, unknown 0.5
2668 Female, age 75, unknown 0.5
2664 Male, age 75, both hemispheres 0.4
1895 Male, age 76, right hemisphere 0.3
2087 Female, age 72, unknown 0.3
1839 Male, age 51, unknown 0.2
1995 Male, age 72, unknown 0.1
Ventral tegmental area
nTPM: 0.4
2021 Male, age 53, unknown 0.5
2218 Male, age 76, both hemispheres 0.5
2223 Female, age 72, unknown 0.4
2410 Female, age 72, unknown 0.4
1915 Female, age 42, unknown 0.3
1942 Male, age 51, unknown 0.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.1
Samples: 139

Max nTPM: 0.8
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 0.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 0.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 0.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 0.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 0.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 0.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 0.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 0.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 0.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 0.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 0.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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