MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA Brain:54.8 nTPM
GTEx:58.4 nTPM
FANTOM5:154.4 Scaled Tags Per Million
Pig:104.5 nTPM
Mouse:60.2 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.6
2586 Male, age 75, left hemisphere 68.9
2666 Male, age 74, left hemisphere 63.7
1870 Female, age 42, unknown 56.7
2828 Female, age 72, unknown 53.4
1827 Male, age 72, unknown 51.4
2019 Male, age 18, unknown 50.7
1830 Male, age 51, unknown 48.3
1833 Male, age 53, unknown 45.4
2219 Male, age 76, both hemispheres 44.4
2411 Female, age 72, unknown 43.0
Dorsal raphe nucleus
nTPM: 46.7
2298 Female, age 72, unknown 50.9
2750 Male, age 76, both hemispheres 47.6
2047 Male, age 72, unknown 47.2
1828 Male, age 53, unknown 46.5
2016 Female, age 72, unknown 41.4
Inferior colliculus
nTPM: 50.7
2849 Male, age 72, unknown 52.3
2097 Female, age 72, unknown 51.5
1848 Female, age 42, unknown 51.0
1890 Male, age 53, unknown 47.8
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Periaquaductal grey, anterior
nTPM: 54.8
1795 Male, age 51, unknown 56.3
1947 Male, age 18, unknown 55.3
2502 Female, age 75, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 43.6
2850 Male, age 76, both hemispheres 52.2
1840 Male, age 53, unknown 46.2
1831 Male, age 72, unknown 40.4
2464 Female, age 72, unknown 35.6
Periaquaductal grey, lateral
nTPM: 45.5
2053 Male, age 18, unknown 49.1
2272 Male, age 74, both hemispheres 44.3
2140 Male, age 76, both hemispheres 43.0
Pretectal area
nTPM: 51.9
2007 Male, age 72, unknown 64.7
1944 Female, age 72, unknown 64.6
1817 Female, age 42, unknown 63.3
1816 Male, age 51, unknown 57.4
1815 Male, age 53, unknown 52.4
2667 Female, age 75, unknown 48.2
2224 Female, age 72, unknown 47.7
2825 Male, age 18, unknown 46.9
2407 Male, age 75, both hemispheres 45.6
2316 Male, age 76, right hemisphere 40.1
2273 Male, age 74, both hemispheres 40.0
Red nucleus
nTPM: 50.2
1821 Female, age 72, unknown 54.7
2785 Male, age 18, unknown 54.6
2584 Male, age 75, left hemisphere 54.1
2503 Female, age 72, unknown 51.9
1954 Female, age 42, unknown 50.8
2725 Female, age 75, unknown 50.7
1865 Male, age 51, unknown 50.3
1904 Male, age 53, unknown 49.6
2769 Male, age 72, unknown 48.9
2227 Male, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 46.8
2588 Male, age 74, left hemisphere 42.7
Substantia nigra
nTPM: 49.7
1889 Female, age 72, unknown 57.6
1916 Female, age 42, unknown 57.4
1941 Male, age 53, unknown 55.0
2665 Male, age 74, both hemispheres 54.2
2583 Male, age 75, right hemisphere 53.9
1851 Male, age 51, unknown 53.4
2241 Male, age 72, unknown 44.7
2590 Female, age 75, unknown 44.3
2699 Male, age 18, unknown 42.6
2409 Female, age 72, unknown 34.2
Superior colliculus
nTPM: 53.5
2668 Female, age 75, unknown 64.1
2261 Male, age 18, unknown 57.7
2664 Male, age 75, both hemispheres 56.9
2087 Female, age 72, unknown 56.8
1796 Male, age 53, unknown 56.4
1913 Female, age 42, unknown 52.3
1995 Male, age 72, unknown 51.3
1839 Male, age 51, unknown 47.3
2587 Male, age 74, left hemisphere 46.8
1895 Male, age 76, right hemisphere 45.4
Ventral tegmental area
nTPM: 48.8
1915 Female, age 42, unknown 53.5
2223 Female, age 72, unknown 53.5
2218 Male, age 76, both hemispheres 50.8
1942 Male, age 51, unknown 46.9
2021 Male, age 53, unknown 45.9
2410 Female, age 72, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.4
Samples: 139

Max nTPM: 99.4
Min nTPM: 31.4
Std nTPM: 10.2
Median nTPM: 58.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 99.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 87.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 81.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 77.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 76.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 72.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.4
FF:10158-103A5 76 years, female 154.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.7
Samples: 4

Max nTPM: 101.1
Min nTPM: 68.7
Sample A Female 98.6
Sample B Female 68.7
Sample C Male 101.1
Sample D Male 82.4
Midbrain
nTPM: 95.4
Samples: 4

Max nTPM: 111.0
Min nTPM: 76.1
Sample A Female 102.9
Sample B Female 76.1
Sample C Male 111.0
Sample D Male 91.6
Periaqueductal gray
nTPM: 77.5
Samples: 3

Max nTPM: 92.5
Min nTPM: 65.7
Sample B Female 65.7
Sample C Male 92.5
Sample D Male 74.4
Superior colliculi
nTPM: 104.5
Samples: 4

Max nTPM: 117.1
Min nTPM: 79.1
Sample A Female 117.1
Sample B Female 79.1
Sample C Male 111.9
Sample D Male 110.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.2
Samples: 4

Max nTPM: 63.7
Min nTPM: 56.3
Sample A Male 63.7
Sample B Male 56.3
Sample C Female 61.2
Sample D Female 59.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
71992007 Antisense, RP_051012_03_H10, Mouse strain C57BL/6J (56 days, male) 1.6

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