MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:52.9 nTPM
GTEx:14.9 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:36.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2219 Male, age 76, both hemispheres 120.6
2586 Male, age 75, left hemisphere 79.4
2019 Male, age 18, unknown 54.6
2666 Male, age 74, left hemisphere 49.2
1827 Male, age 72, unknown 38.5
1870 Female, age 42, unknown 38.4
2828 Female, age 72, unknown 38.3
1833 Male, age 53, unknown 38.0
1830 Male, age 51, unknown 37.3
2411 Female, age 72, unknown 35.2
Dorsal raphe nucleus
nTPM: 40.4
2016 Female, age 72, unknown 45.8
2047 Male, age 72, unknown 42.7
1828 Male, age 53, unknown 42.2
2298 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 29.6
Inferior colliculus
nTPM: 41.3
1890 Male, age 53, unknown 46.8
2849 Male, age 72, unknown 43.3
1848 Female, age 42, unknown 38.9
2097 Female, age 72, unknown 36.2
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 49.0
1947 Male, age 18, unknown 53.7
2502 Female, age 75, unknown 47.8
1795 Male, age 51, unknown 45.5
Periaquaductal grey, dorsal
nTPM: 41.4
2850 Male, age 76, both hemispheres 47.3
1831 Male, age 72, unknown 42.1
2464 Female, age 72, unknown 38.3
1840 Male, age 53, unknown 37.9
Periaquaductal grey, lateral
nTPM: 40.5
2140 Male, age 76, both hemispheres 42.8
2272 Male, age 74, both hemispheres 40.6
2053 Male, age 18, unknown 38.2
Pretectal area
nTPM: 50.6
1816 Male, age 51, unknown 68.0
1817 Female, age 42, unknown 66.2
2007 Male, age 72, unknown 66.0
1815 Male, age 53, unknown 53.4
2407 Male, age 75, both hemispheres 52.0
1944 Female, age 72, unknown 50.6
2273 Male, age 74, both hemispheres 49.0
2667 Female, age 75, unknown 43.8
2825 Male, age 18, unknown 39.8
2224 Female, age 72, unknown 39.0
2316 Male, age 76, right hemisphere 28.8
Red nucleus
nTPM: 42.0
2785 Male, age 18, unknown 55.0
2588 Male, age 74, left hemisphere 50.7
2584 Male, age 75, left hemisphere 49.4
2503 Female, age 72, unknown 44.9
1865 Male, age 51, unknown 44.3
2227 Male, age 72, unknown 40.8
2725 Female, age 75, unknown 39.5
1954 Female, age 42, unknown 39.3
2769 Male, age 72, unknown 39.2
1821 Female, age 72, unknown 38.4
1904 Male, age 53, unknown 34.5
2823 Male, age 76, right hemisphere 27.9
Substantia nigra
nTPM: 42.6
1941 Male, age 53, unknown 66.1
2583 Male, age 75, right hemisphere 55.5
1889 Female, age 72, unknown 47.1
2665 Male, age 74, both hemispheres 46.8
2590 Female, age 75, unknown 40.1
1851 Male, age 51, unknown 40.0
2699 Male, age 18, unknown 35.5
1916 Female, age 42, unknown 33.2
2409 Female, age 72, unknown 32.6
2241 Male, age 72, unknown 29.0
Superior colliculus
nTPM: 48.3
1995 Male, age 72, unknown 59.2
2668 Female, age 75, unknown 58.9
2664 Male, age 75, both hemispheres 57.8
2087 Female, age 72, unknown 50.8
1913 Female, age 42, unknown 46.7
1839 Male, age 51, unknown 46.4
2261 Male, age 18, unknown 44.0
1796 Male, age 53, unknown 43.9
2587 Male, age 74, left hemisphere 42.2
1895 Male, age 76, right hemisphere 32.7
Ventral tegmental area
nTPM: 40.1
2223 Female, age 72, unknown 67.3
1942 Male, age 51, unknown 38.6
2410 Female, age 72, unknown 38.1
2021 Male, age 53, unknown 33.4
1915 Female, age 42, unknown 32.9
2218 Male, age 76, both hemispheres 30.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 47.8
Min nTPM: 8.0
Std nTPM: 5.1
Median nTPM: 13.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 38.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 31.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 26.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 23.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 22.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 20.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.6
FF:10158-103A5 76 years, female 16.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 24.7
Sample A Female 34.4
Sample B Female 27.7
Sample C Male 29.1
Sample D Male 24.7
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 72.6
Min nTPM: 27.1
Sample A Female 72.6
Sample B Female 27.3
Sample C Male 42.5
Sample D Male 27.1
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 32.2
Min nTPM: 25.9
Sample B Female 26.1
Sample C Male 32.2
Sample D Male 25.9
Superior colliculi
nTPM: 35.3
Samples: 4

Max nTPM: 41.5
Min nTPM: 32.5
Sample A Female 34.0
Sample B Female 33.3
Sample C Male 41.5
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 37.7
Min nTPM: 34.4
Sample A Male 37.7
Sample B Male 36.6
Sample C Female 36.1
Sample D Female 34.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
2742 Antisense, RP_Baylor_103172, Mouse strain C57BL/6J (56 days, male) 0.3
2741 Antisense, RP_Baylor_103172, Mouse strain C57BL/6J (56 days, male) 0.2

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