MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.0 nTPM
HPA Brain:33.5 nTPM
GTEx:98.0 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:120.0 nTPM
Mouse:116.3 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2219 Male, age 76, both hemispheres 49.1
2828 Female, age 72, unknown 38.7
2666 Male, age 74, left hemisphere 26.0
1870 Female, age 42, unknown 24.9
2019 Male, age 18, unknown 24.7
1830 Male, age 51, unknown 21.6
1833 Male, age 53, unknown 21.1
2586 Male, age 75, left hemisphere 17.9
2411 Female, age 72, unknown 15.1
1827 Male, age 72, unknown 14.3
Dorsal raphe nucleus
nTPM: 20.8
2016 Female, age 72, unknown 27.7
2750 Male, age 76, both hemispheres 26.3
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 17.4
2298 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 27.7
2849 Male, age 72, unknown 49.7
1890 Male, age 53, unknown 24.0
2097 Female, age 72, unknown 19.1
1848 Female, age 42, unknown 18.0
Median raphe nucleus
nTPM: 33.5
2220 Male, age 76, midline 33.5
Periaquaductal grey, anterior
nTPM: 17.2
1795 Male, age 51, unknown 20.3
2502 Female, age 75, unknown 18.5
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 22.6
2850 Male, age 76, both hemispheres 53.4
1840 Male, age 53, unknown 14.0
2464 Female, age 72, unknown 13.6
1831 Male, age 72, unknown 9.5
Periaquaductal grey, lateral
nTPM: 15.6
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 7.9
Pretectal area
nTPM: 20.5
2224 Female, age 72, unknown 29.7
2825 Male, age 18, unknown 25.0
2667 Female, age 75, unknown 24.7
2316 Male, age 76, right hemisphere 22.5
2273 Male, age 74, both hemispheres 22.1
1815 Male, age 53, unknown 20.8
2407 Male, age 75, both hemispheres 19.7
1816 Male, age 51, unknown 19.3
1817 Female, age 42, unknown 15.8
2007 Male, age 72, unknown 15.0
1944 Female, age 72, unknown 10.5
Red nucleus
nTPM: 25.4
2503 Female, age 72, unknown 36.7
2725 Female, age 75, unknown 32.1
2769 Male, age 72, unknown 31.4
1865 Male, age 51, unknown 30.8
2227 Male, age 72, unknown 29.7
1904 Male, age 53, unknown 28.4
2785 Male, age 18, unknown 27.1
1954 Female, age 42, unknown 21.3
2588 Male, age 74, left hemisphere 18.6
1821 Female, age 72, unknown 17.1
2823 Male, age 76, right hemisphere 16.6
2584 Male, age 75, left hemisphere 15.0
Substantia nigra
nTPM: 23.8
2699 Male, age 18, unknown 37.0
2409 Female, age 72, unknown 31.5
2241 Male, age 72, unknown 31.1
1916 Female, age 42, unknown 25.0
2665 Male, age 74, both hemispheres 24.4
1941 Male, age 53, unknown 24.3
1851 Male, age 51, unknown 20.8
2583 Male, age 75, right hemisphere 16.1
2590 Female, age 75, unknown 15.3
1889 Female, age 72, unknown 12.8
Superior colliculus
nTPM: 17.8
1913 Female, age 42, unknown 26.8
1796 Male, age 53, unknown 21.4
1995 Male, age 72, unknown 18.7
2261 Male, age 18, unknown 17.0
1839 Male, age 51, unknown 16.7
1895 Male, age 76, right hemisphere 16.6
2087 Female, age 72, unknown 16.6
2664 Male, age 75, both hemispheres 15.4
2587 Male, age 74, left hemisphere 14.5
2668 Female, age 75, unknown 14.4
Ventral tegmental area
nTPM: 28.5
2218 Male, age 76, both hemispheres 38.5
2223 Female, age 72, unknown 36.7
2410 Female, age 72, unknown 28.5
2021 Male, age 53, unknown 24.2
1942 Male, age 51, unknown 23.5
1915 Female, age 42, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.0
Samples: 139

Max nTPM: 173.1
Min nTPM: 58.2
Std nTPM: 18.2
Median nTPM: 96.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 173.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 154.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 145.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 144.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 143.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 134.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 134.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 132.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 131.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 131.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.9
FF:10158-103A5 76 years, female 72.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.1
Samples: 4

Max nTPM: 125.6
Min nTPM: 91.0
Sample A Female 125.6
Sample B Female 91.0
Sample C Male 100.8
Sample D Male 114.9
Midbrain
nTPM: 120.1
Samples: 4

Max nTPM: 189.7
Min nTPM: 86.8
Sample A Female 189.7
Sample B Female 107.5
Sample C Male 96.2
Sample D Male 86.8
Periaqueductal gray
nTPM: 96.0
Samples: 3

Max nTPM: 99.4
Min nTPM: 90.3
Sample B Female 98.4
Sample C Male 99.4
Sample D Male 90.3
Superior colliculi
nTPM: 111.6
Samples: 4

Max nTPM: 130.2
Min nTPM: 104.2
Sample A Female 130.2
Sample B Female 105.1
Sample C Male 106.7
Sample D Male 104.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 116.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.4
Samples: 4

Max nTPM: 126.2
Min nTPM: 110.9
Sample A Male 126.2
Sample B Male 110.9
Sample C Female 111.7
Sample D Female 116.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69202675 Antisense, RP_050324_04_B07, Mouse strain C57BL/6J (56 days, male) 12.1

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