MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA Brain:15.8 nTPM
GTEx:17.1 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:16.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
2411 Female, age 72, unknown 16.7
2019 Male, age 18, unknown 16.5
1827 Male, age 72, unknown 16.1
2219 Male, age 76, both hemispheres 13.7
2828 Female, age 72, unknown 13.2
1870 Female, age 42, unknown 13.1
2586 Male, age 75, left hemisphere 12.7
2666 Male, age 74, left hemisphere 12.6
1830 Male, age 51, unknown 11.0
1833 Male, age 53, unknown 10.7
Dorsal raphe nucleus
nTPM: 13.9
2298 Female, age 72, unknown 18.7
1828 Male, age 53, unknown 13.3
2047 Male, age 72, unknown 13.3
2750 Male, age 76, both hemispheres 12.9
2016 Female, age 72, unknown 11.4
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 16.3
1890 Male, age 53, unknown 14.3
2849 Male, age 72, unknown 11.7
1848 Female, age 42, unknown 11.4
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Periaquaductal grey, anterior
nTPM: 15.8
1795 Male, age 51, unknown 16.8
1947 Male, age 18, unknown 16.5
2502 Female, age 75, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 12.0
1831 Male, age 72, unknown 13.3
2464 Female, age 72, unknown 12.4
1840 Male, age 53, unknown 12.3
2850 Male, age 76, both hemispheres 10.0
Periaquaductal grey, lateral
nTPM: 11.7
2272 Male, age 74, both hemispheres 16.0
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 8.3
Pretectal area
nTPM: 15.0
2007 Male, age 72, unknown 20.2
1816 Male, age 51, unknown 18.6
2273 Male, age 74, both hemispheres 16.6
1817 Female, age 42, unknown 16.1
1815 Male, age 53, unknown 15.5
1944 Female, age 72, unknown 15.3
2224 Female, age 72, unknown 14.7
2667 Female, age 75, unknown 13.3
2316 Male, age 76, right hemisphere 11.9
2825 Male, age 18, unknown 11.6
2407 Male, age 75, both hemispheres 11.3
Red nucleus
nTPM: 12.4
2725 Female, age 75, unknown 16.3
1821 Female, age 72, unknown 14.2
2785 Male, age 18, unknown 14.2
2503 Female, age 72, unknown 13.6
1904 Male, age 53, unknown 11.9
1954 Female, age 42, unknown 11.9
2227 Male, age 72, unknown 11.5
2769 Male, age 72, unknown 11.5
2823 Male, age 76, right hemisphere 11.5
1865 Male, age 51, unknown 11.3
2584 Male, age 75, left hemisphere 10.6
2588 Male, age 74, left hemisphere 9.8
Substantia nigra
nTPM: 14.5
1916 Female, age 42, unknown 18.8
1941 Male, age 53, unknown 17.0
1851 Male, age 51, unknown 16.4
1889 Female, age 72, unknown 15.7
2665 Male, age 74, both hemispheres 14.0
2409 Female, age 72, unknown 12.9
2583 Male, age 75, right hemisphere 12.8
2590 Female, age 75, unknown 12.8
2241 Male, age 72, unknown 12.6
2699 Male, age 18, unknown 12.1
Superior colliculus
nTPM: 12.6
1796 Male, age 53, unknown 15.3
2087 Female, age 72, unknown 14.9
2261 Male, age 18, unknown 13.4
1913 Female, age 42, unknown 13.2
2668 Female, age 75, unknown 13.0
1895 Male, age 76, right hemisphere 12.8
2587 Male, age 74, left hemisphere 12.6
1839 Male, age 51, unknown 11.0
1995 Male, age 72, unknown 10.3
2664 Male, age 75, both hemispheres 9.9
Ventral tegmental area
nTPM: 15.0
1915 Female, age 42, unknown 19.1
2410 Female, age 72, unknown 16.4
2218 Male, age 76, both hemispheres 15.8
1942 Male, age 51, unknown 14.6
2223 Female, age 72, unknown 12.5
2021 Male, age 53, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.1
Samples: 139

Max nTPM: 33.9
Min nTPM: 8.3
Std nTPM: 4.8
Median nTPM: 16.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 30.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 29.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 27.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 26.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 27.1
Min nTPM: 15.2
Sample A Female 27.1
Sample B Female 19.0
Sample C Male 24.4
Sample D Male 15.2
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 25.6
Min nTPM: 19.9
Sample A Female 25.2
Sample B Female 19.9
Sample C Male 25.6
Sample D Male 22.3
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 21.5
Min nTPM: 16.8
Sample B Female 17.6
Sample C Male 21.5
Sample D Male 16.8
Superior colliculi
nTPM: 23.6
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.7
Sample A Female 27.4
Sample B Female 22.4
Sample C Male 23.7
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.5
Sample A Male 18.6
Sample B Male 17.8
Sample C Female 12.5
Sample D Female 15.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
393254 Antisense, RP_040809_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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