MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1538.9 nTPM
HPA Brain:1321.7 nTPM
GTEx:1538.9 nTPM
FANTOM5:855.7 Scaled Tags Per Million
Pig:229.6 nTPM
Mouse:58.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1321.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1020.7
2666 Male, age 74, left hemisphere 1419.9
2586 Male, age 75, left hemisphere 1268.2
1830 Male, age 51, unknown 1170.6
1833 Male, age 53, unknown 1104.4
2411 Female, age 72, unknown 1075.4
2019 Male, age 18, unknown 996.4
1870 Female, age 42, unknown 931.9
2828 Female, age 72, unknown 912.9
1827 Male, age 72, unknown 735.6
2219 Male, age 76, both hemispheres 591.1
Dorsal raphe nucleus
nTPM: 666.1
2750 Male, age 76, both hemispheres 1007.0
2016 Female, age 72, unknown 815.7
1828 Male, age 53, unknown 648.7
2047 Male, age 72, unknown 499.1
2298 Female, age 72, unknown 359.9
Inferior colliculus
nTPM: 619.4
1848 Female, age 42, unknown 693.7
1890 Male, age 53, unknown 687.7
2849 Male, age 72, unknown 616.2
2097 Female, age 72, unknown 480.0
Median raphe nucleus
nTPM: 518.3
2220 Male, age 76, midline 518.3
Periaquaductal grey, anterior
nTPM: 631.0
2502 Female, age 75, unknown 731.6
1947 Male, age 18, unknown 658.8
1795 Male, age 51, unknown 502.7
Periaquaductal grey, dorsal
nTPM: 502.9
2464 Female, age 72, unknown 736.1
1831 Male, age 72, unknown 594.6
1840 Male, age 53, unknown 386.5
2850 Male, age 76, both hemispheres 294.6
Periaquaductal grey, lateral
nTPM: 458.3
2053 Male, age 18, unknown 612.1
2272 Male, age 74, both hemispheres 480.2
2140 Male, age 76, both hemispheres 282.6
Pretectal area
nTPM: 647.4
1815 Male, age 53, unknown 898.5
2407 Male, age 75, both hemispheres 854.0
2007 Male, age 72, unknown 769.2
1817 Female, age 42, unknown 753.6
2316 Male, age 76, right hemisphere 737.5
2825 Male, age 18, unknown 642.6
1944 Female, age 72, unknown 577.1
1816 Male, age 51, unknown 555.9
2273 Male, age 74, both hemispheres 457.4
2667 Female, age 75, unknown 449.0
2224 Female, age 72, unknown 427.2
Red nucleus
nTPM: 1321.7
2588 Male, age 74, left hemisphere 1780.2
2503 Female, age 72, unknown 1619.5
1904 Male, age 53, unknown 1440.0
1865 Male, age 51, unknown 1423.1
1821 Female, age 72, unknown 1301.1
2769 Male, age 72, unknown 1248.4
2227 Male, age 72, unknown 1244.6
2823 Male, age 76, right hemisphere 1207.5
1954 Female, age 42, unknown 1190.4
2785 Male, age 18, unknown 1175.3
2584 Male, age 75, left hemisphere 1119.8
2725 Female, age 75, unknown 1110.2
Substantia nigra
nTPM: 857.6
2665 Male, age 74, both hemispheres 1042.3
2590 Female, age 75, unknown 1024.6
2583 Male, age 75, right hemisphere 990.6
2409 Female, age 72, unknown 956.0
1851 Male, age 51, unknown 896.5
1889 Female, age 72, unknown 811.0
2699 Male, age 18, unknown 790.8
2241 Male, age 72, unknown 789.8
1941 Male, age 53, unknown 663.2
1916 Female, age 42, unknown 611.0
Superior colliculus
nTPM: 851.2
1995 Male, age 72, unknown 1073.2
2587 Male, age 74, left hemisphere 1042.7
1913 Female, age 42, unknown 972.3
2668 Female, age 75, unknown 966.7
2664 Male, age 75, both hemispheres 897.0
1839 Male, age 51, unknown 891.7
1895 Male, age 76, right hemisphere 737.9
1796 Male, age 53, unknown 654.1
2261 Male, age 18, unknown 651.9
2087 Female, age 72, unknown 624.6
Ventral tegmental area
nTPM: 789.3
2223 Female, age 72, unknown 1028.7
2410 Female, age 72, unknown 972.1
2021 Male, age 53, unknown 753.1
1942 Male, age 51, unknown 744.2
1915 Female, age 42, unknown 667.3
2218 Male, age 76, both hemispheres 570.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1538.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1538.9
Samples: 139

Max nTPM: 4955.4
Min nTPM: 309.9
Std nTPM: 868.0
Median nTPM: 1312.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4955.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4067.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3559.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 3449.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3290.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3237.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3225.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3217.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3144.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3141.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3090.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 855.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 855.7
FF:10158-103A5 76 years, female 855.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 229.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 213.6
Samples: 4

Max nTPM: 261.1
Min nTPM: 161.1
Sample A Female 238.5
Sample B Female 161.1
Sample C Male 193.7
Sample D Male 261.1
Midbrain
nTPM: 229.6
Samples: 4

Max nTPM: 330.6
Min nTPM: 162.7
Sample A Female 330.6
Sample B Female 253.4
Sample C Male 171.6
Sample D Male 162.7
Periaqueductal gray
nTPM: 179.0
Samples: 3

Max nTPM: 209.5
Min nTPM: 158.8
Sample B Female 209.5
Sample C Male 158.8
Sample D Male 168.8
Superior colliculi
nTPM: 179.1
Samples: 4

Max nTPM: 204.5
Min nTPM: 109.8
Sample A Female 200.8
Sample B Female 109.8
Sample C Male 201.2
Sample D Male 204.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 59.2
Min nTPM: 57.6
Sample A Male 59.2
Sample B Male 58.5
Sample C Female 58.4
Sample D Female 57.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68845502 Antisense, RP_050224_01_H07, Mouse strain C57BL/6J (56 days, male) 1.2
71587888 Antisense, RP_050725_03_G01, Mouse strain C57BL/6J (56 days, male) 1.1

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