MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:42.0 nTPM
GTEx:7.6 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:8.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
2586 Male, age 75, left hemisphere 51.9
2666 Male, age 74, left hemisphere 47.4
1833 Male, age 53, unknown 43.9
1830 Male, age 51, unknown 43.2
2219 Male, age 76, both hemispheres 43.2
2828 Female, age 72, unknown 41.9
1870 Female, age 42, unknown 38.3
1827 Male, age 72, unknown 38.0
2411 Female, age 72, unknown 36.4
2019 Male, age 18, unknown 35.4
Dorsal raphe nucleus
nTPM: 35.1
2016 Female, age 72, unknown 37.9
2047 Male, age 72, unknown 37.8
1828 Male, age 53, unknown 36.3
2750 Male, age 76, both hemispheres 33.9
2298 Female, age 72, unknown 29.5
Inferior colliculus
nTPM: 40.1
2849 Male, age 72, unknown 48.0
1890 Male, age 53, unknown 39.6
1848 Female, age 42, unknown 38.8
2097 Female, age 72, unknown 34.1
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Periaquaductal grey, anterior
nTPM: 33.7
1947 Male, age 18, unknown 35.7
2502 Female, age 75, unknown 33.8
1795 Male, age 51, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 38.0
1840 Male, age 53, unknown 39.1
2464 Female, age 72, unknown 38.9
2850 Male, age 76, both hemispheres 38.8
1831 Male, age 72, unknown 35.3
Periaquaductal grey, lateral
nTPM: 34.9
2140 Male, age 76, both hemispheres 39.3
2053 Male, age 18, unknown 35.4
2272 Male, age 74, both hemispheres 30.1
Pretectal area
nTPM: 35.7
2407 Male, age 75, both hemispheres 43.5
2667 Female, age 75, unknown 38.7
2316 Male, age 76, right hemisphere 38.5
2825 Male, age 18, unknown 38.5
1815 Male, age 53, unknown 36.8
1817 Female, age 42, unknown 36.0
2224 Female, age 72, unknown 34.6
2007 Male, age 72, unknown 33.0
1944 Female, age 72, unknown 32.8
1816 Male, age 51, unknown 31.5
2273 Male, age 74, both hemispheres 28.7
Red nucleus
nTPM: 40.5
2584 Male, age 75, left hemisphere 45.6
2588 Male, age 74, left hemisphere 44.2
1865 Male, age 51, unknown 43.6
1904 Male, age 53, unknown 42.8
2503 Female, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 39.7
2227 Male, age 72, unknown 39.4
1954 Female, age 42, unknown 39.2
2769 Male, age 72, unknown 39.2
2785 Male, age 18, unknown 38.2
2725 Female, age 75, unknown 37.1
1821 Female, age 72, unknown 36.2
Substantia nigra
nTPM: 40.1
2699 Male, age 18, unknown 49.4
2665 Male, age 74, both hemispheres 46.7
2583 Male, age 75, right hemisphere 43.1
2241 Male, age 72, unknown 41.6
1851 Male, age 51, unknown 40.3
1916 Female, age 42, unknown 40.1
2409 Female, age 72, unknown 36.9
2590 Female, age 75, unknown 35.4
1889 Female, age 72, unknown 34.4
1941 Male, age 53, unknown 32.9
Superior colliculus
nTPM: 38.8
2664 Male, age 75, both hemispheres 48.0
2668 Female, age 75, unknown 43.2
1913 Female, age 42, unknown 40.2
1895 Male, age 76, right hemisphere 39.3
1839 Male, age 51, unknown 39.0
1995 Male, age 72, unknown 37.7
2587 Male, age 74, left hemisphere 37.6
1796 Male, age 53, unknown 35.1
2087 Female, age 72, unknown 34.6
2261 Male, age 18, unknown 33.2
Ventral tegmental area
nTPM: 38.1
2021 Male, age 53, unknown 41.2
1942 Male, age 51, unknown 39.6
1915 Female, age 42, unknown 37.7
2223 Female, age 72, unknown 37.2
2218 Male, age 76, both hemispheres 37.0
2410 Female, age 72, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 11.2
Min nTPM: 4.8
Std nTPM: 1.4
Median nTPM: 7.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 11.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 10.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 10.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 10.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 10.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 9.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 9.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.2
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 18.5
Sample C Male 21.3
Sample D Male 23.1
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.8
Sample A Female 24.2
Sample B Female 16.8
Sample C Male 19.8
Sample D Male 19.5
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.6
Min nTPM: 16.8
Sample B Female 16.9
Sample C Male 18.6
Sample D Male 16.8
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 22.3
Min nTPM: 16.8
Sample A Female 17.6
Sample B Female 16.8
Sample C Male 17.2
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 8.4
Sample C Female 8.9
Sample D Female 8.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69407182 Antisense, RP_050414_01_A09, Mouse strain C57BL/6J (56 days, male) 1.0

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