MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:34.2 nTPM
GTEx:10.2 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:13.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2411 Female, age 72, unknown 37.7
2019 Male, age 18, unknown 31.2
1830 Male, age 51, unknown 30.5
1870 Female, age 42, unknown 29.2
1833 Male, age 53, unknown 28.7
2828 Female, age 72, unknown 26.6
2586 Male, age 75, left hemisphere 25.0
2219 Male, age 76, both hemispheres 20.3
1827 Male, age 72, unknown 20.2
2666 Male, age 74, left hemisphere 18.9
Dorsal raphe nucleus
nTPM: 19.9
2750 Male, age 76, both hemispheres 34.6
2016 Female, age 72, unknown 21.5
1828 Male, age 53, unknown 17.6
2047 Male, age 72, unknown 13.4
2298 Female, age 72, unknown 12.3
Inferior colliculus
nTPM: 16.9
1890 Male, age 53, unknown 17.8
1848 Female, age 42, unknown 17.6
2097 Female, age 72, unknown 16.5
2849 Male, age 72, unknown 15.9
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 17.2
2502 Female, age 75, unknown 19.9
1947 Male, age 18, unknown 17.0
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 13.2
2464 Female, age 72, unknown 22.3
1831 Male, age 72, unknown 13.1
1840 Male, age 53, unknown 9.3
2850 Male, age 76, both hemispheres 8.2
Periaquaductal grey, lateral
nTPM: 15.9
2272 Male, age 74, both hemispheres 21.0
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 17.2
2316 Male, age 76, right hemisphere 26.9
1815 Male, age 53, unknown 22.1
2407 Male, age 75, both hemispheres 20.2
2825 Male, age 18, unknown 18.4
2007 Male, age 72, unknown 18.2
2273 Male, age 74, both hemispheres 17.2
1817 Female, age 42, unknown 16.9
2224 Female, age 72, unknown 15.3
2667 Female, age 75, unknown 13.1
1816 Male, age 51, unknown 11.3
1944 Female, age 72, unknown 9.3
Red nucleus
nTPM: 34.2
1904 Male, age 53, unknown 40.5
2227 Male, age 72, unknown 39.7
2785 Male, age 18, unknown 39.4
2769 Male, age 72, unknown 39.3
2503 Female, age 72, unknown 39.1
2588 Male, age 74, left hemisphere 36.1
1865 Male, age 51, unknown 35.9
1821 Female, age 72, unknown 31.6
1954 Female, age 42, unknown 29.5
2823 Male, age 76, right hemisphere 29.4
2584 Male, age 75, left hemisphere 25.6
2725 Female, age 75, unknown 24.3
Substantia nigra
nTPM: 17.3
2583 Male, age 75, right hemisphere 25.0
2590 Female, age 75, unknown 24.0
1851 Male, age 51, unknown 21.6
1889 Female, age 72, unknown 18.7
2409 Female, age 72, unknown 18.0
1941 Male, age 53, unknown 14.9
2699 Male, age 18, unknown 14.2
1916 Female, age 42, unknown 12.8
2241 Male, age 72, unknown 12.6
2665 Male, age 74, both hemispheres 10.8
Superior colliculus
nTPM: 22.6
1995 Male, age 72, unknown 33.3
1913 Female, age 42, unknown 32.4
1895 Male, age 76, right hemisphere 28.7
1839 Male, age 51, unknown 23.9
2587 Male, age 74, left hemisphere 23.7
2668 Female, age 75, unknown 22.5
1796 Male, age 53, unknown 21.0
2261 Male, age 18, unknown 15.4
2664 Male, age 75, both hemispheres 15.1
2087 Female, age 72, unknown 10.6
Ventral tegmental area
nTPM: 21.1
2410 Female, age 72, unknown 28.2
2223 Female, age 72, unknown 25.9
1942 Male, age 51, unknown 19.4
1915 Female, age 42, unknown 19.0
2021 Male, age 53, unknown 17.5
2218 Male, age 76, both hemispheres 16.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.2
Samples: 139

Max nTPM: 44.3
Min nTPM: 1.1
Std nTPM: 6.8
Median nTPM: 8.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 21.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 21.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.6
FF:10158-103A5 76 years, female 39.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 3.4
Sample A Female 11.6
Sample B Female 4.9
Sample C Male 3.4
Sample D Male 8.2
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 4.1
Sample A Female 15.8
Sample B Female 7.6
Sample C Male 4.1
Sample D Male 4.7
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 7.1
Min nTPM: 3.8
Sample B Female 7.1
Sample C Male 3.8
Sample D Male 5.7
Superior colliculi
nTPM: 5.5
Samples: 4

Max nTPM: 9.5
Min nTPM: 2.5
Sample A Female 9.5
Sample B Female 2.5
Sample C Male 4.2
Sample D Male 5.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 14.1
Min nTPM: 13.4
Sample A Male 13.7
Sample B Male 14.1
Sample C Female 13.9
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71213189 Antisense, RP_050816_04_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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