MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:55.6 nTPM
GTEx:28.4 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:52.5 nTPM
Mouse:62.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2219 Male, age 76, both hemispheres 53.9
2666 Male, age 74, left hemisphere 48.6
1827 Male, age 72, unknown 48.5
2586 Male, age 75, left hemisphere 46.3
1870 Female, age 42, unknown 44.0
2019 Male, age 18, unknown 43.9
1833 Male, age 53, unknown 43.5
2411 Female, age 72, unknown 43.1
1830 Male, age 51, unknown 40.9
2828 Female, age 72, unknown 37.7
Dorsal raphe nucleus
nTPM: 40.1
1828 Male, age 53, unknown 43.4
2750 Male, age 76, both hemispheres 40.8
2298 Female, age 72, unknown 40.5
2047 Male, age 72, unknown 39.5
2016 Female, age 72, unknown 36.3
Inferior colliculus
nTPM: 45.0
1890 Male, age 53, unknown 47.7
2097 Female, age 72, unknown 45.6
2849 Male, age 72, unknown 45.0
1848 Female, age 42, unknown 41.5
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Periaquaductal grey, anterior
nTPM: 45.3
1947 Male, age 18, unknown 48.9
2502 Female, age 75, unknown 44.6
1795 Male, age 51, unknown 42.4
Periaquaductal grey, dorsal
nTPM: 41.9
1840 Male, age 53, unknown 49.9
2464 Female, age 72, unknown 44.4
2850 Male, age 76, both hemispheres 38.1
1831 Male, age 72, unknown 35.5
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 37.5
2053 Male, age 18, unknown 35.1
2272 Male, age 74, both hemispheres 33.7
Pretectal area
nTPM: 46.1
2007 Male, age 72, unknown 59.6
1817 Female, age 42, unknown 55.4
1944 Female, age 72, unknown 55.0
1816 Male, age 51, unknown 54.0
1815 Male, age 53, unknown 49.7
2825 Male, age 18, unknown 42.9
2407 Male, age 75, both hemispheres 42.7
2224 Female, age 72, unknown 42.0
2667 Female, age 75, unknown 38.9
2316 Male, age 76, right hemisphere 33.9
2273 Male, age 74, both hemispheres 33.1
Red nucleus
nTPM: 41.0
2725 Female, age 75, unknown 50.5
2584 Male, age 75, left hemisphere 50.2
2588 Male, age 74, left hemisphere 46.6
1821 Female, age 72, unknown 43.9
2785 Male, age 18, unknown 43.2
2503 Female, age 72, unknown 42.5
1865 Male, age 51, unknown 38.3
2769 Male, age 72, unknown 37.2
2227 Male, age 72, unknown 37.0
1954 Female, age 42, unknown 35.3
1904 Male, age 53, unknown 35.1
2823 Male, age 76, right hemisphere 32.6
Substantia nigra
nTPM: 55.6
1916 Female, age 42, unknown 71.5
2241 Male, age 72, unknown 64.9
1851 Male, age 51, unknown 59.1
2409 Female, age 72, unknown 56.8
2665 Male, age 74, both hemispheres 55.8
1941 Male, age 53, unknown 53.5
2699 Male, age 18, unknown 53.4
1889 Female, age 72, unknown 52.9
2583 Male, age 75, right hemisphere 44.3
2590 Female, age 75, unknown 43.7
Superior colliculus
nTPM: 43.5
2668 Female, age 75, unknown 51.9
2587 Male, age 74, left hemisphere 46.7
2087 Female, age 72, unknown 46.5
1839 Male, age 51, unknown 43.7
1796 Male, age 53, unknown 42.7
1895 Male, age 76, right hemisphere 42.7
2261 Male, age 18, unknown 42.2
2664 Male, age 75, both hemispheres 41.1
1913 Female, age 42, unknown 40.9
1995 Male, age 72, unknown 36.7
Ventral tegmental area
nTPM: 47.1
2218 Male, age 76, both hemispheres 53.9
1915 Female, age 42, unknown 53.7
2410 Female, age 72, unknown 50.4
1942 Male, age 51, unknown 44.9
2223 Female, age 72, unknown 41.4
2021 Male, age 53, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 53.8
Min nTPM: 14.8
Std nTPM: 7.2
Median nTPM: 26.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 46.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 44.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 42.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 42.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 41.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 40.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.2
FF:10158-103A5 76 years, female 71.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 41.1
Sample A Female 52.5
Sample B Female 41.1
Sample C Male 56.5
Sample D Male 43.9
Midbrain
nTPM: 52.5
Samples: 4

Max nTPM: 66.2
Min nTPM: 44.5
Sample A Female 45.4
Sample B Female 44.5
Sample C Male 66.2
Sample D Male 53.7
Periaqueductal gray
nTPM: 45.3
Samples: 3

Max nTPM: 49.4
Min nTPM: 42.0
Sample B Female 42.0
Sample C Male 49.4
Sample D Male 44.4
Superior colliculi
nTPM: 52.5
Samples: 4

Max nTPM: 62.1
Min nTPM: 40.3
Sample A Female 56.9
Sample B Female 40.3
Sample C Male 62.1
Sample D Male 50.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.5
Samples: 4

Max nTPM: 64.5
Min nTPM: 60.0
Sample A Male 60.0
Sample B Male 62.0
Sample C Female 63.5
Sample D Female 64.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69015649 Antisense, RP_050315_01_D09, Mouse strain C57BL/6J (56 days, male) 1.2

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