MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA Brain:38.4 nTPM
GTEx:54.6 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:12.2 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2019 Male, age 18, unknown 35.7
2828 Female, age 72, unknown 32.6
1870 Female, age 42, unknown 29.7
2411 Female, age 72, unknown 29.1
1833 Male, age 53, unknown 27.1
1827 Male, age 72, unknown 26.5
1830 Male, age 51, unknown 25.8
2666 Male, age 74, left hemisphere 23.5
2586 Male, age 75, left hemisphere 21.6
2219 Male, age 76, both hemispheres 16.2
Dorsal raphe nucleus
nTPM: 32.8
2298 Female, age 72, unknown 36.4
1828 Male, age 53, unknown 34.7
2047 Male, age 72, unknown 32.0
2750 Male, age 76, both hemispheres 31.8
2016 Female, age 72, unknown 28.9
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 41.6
1890 Male, age 53, unknown 36.1
1848 Female, age 42, unknown 27.0
2849 Male, age 72, unknown 19.2
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 28.5
1947 Male, age 18, unknown 33.3
1795 Male, age 51, unknown 33.2
2502 Female, age 75, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 29.6
1831 Male, age 72, unknown 35.1
2850 Male, age 76, both hemispheres 31.1
2464 Female, age 72, unknown 27.5
1840 Male, age 53, unknown 24.8
Periaquaductal grey, lateral
nTPM: 37.3
2272 Male, age 74, both hemispheres 51.3
2140 Male, age 76, both hemispheres 30.4
2053 Male, age 18, unknown 30.2
Pretectal area
nTPM: 33.6
2273 Male, age 74, both hemispheres 59.5
1817 Female, age 42, unknown 45.1
2667 Female, age 75, unknown 35.5
1816 Male, age 51, unknown 34.1
1944 Female, age 72, unknown 34.0
2224 Female, age 72, unknown 33.1
2007 Male, age 72, unknown 31.5
1815 Male, age 53, unknown 31.2
2825 Male, age 18, unknown 25.1
2316 Male, age 76, right hemisphere 20.5
2407 Male, age 75, both hemispheres 19.9
Red nucleus
nTPM: 36.9
1821 Female, age 72, unknown 45.8
1954 Female, age 42, unknown 42.4
2725 Female, age 75, unknown 42.4
2503 Female, age 72, unknown 40.6
2823 Male, age 76, right hemisphere 39.6
1904 Male, age 53, unknown 38.8
1865 Male, age 51, unknown 38.4
2769 Male, age 72, unknown 37.5
2227 Male, age 72, unknown 36.9
2785 Male, age 18, unknown 34.2
2588 Male, age 74, left hemisphere 29.2
2584 Male, age 75, left hemisphere 17.2
Substantia nigra
nTPM: 38.4
2409 Female, age 72, unknown 45.1
1851 Male, age 51, unknown 44.9
1916 Female, age 42, unknown 44.6
1889 Female, age 72, unknown 40.9
2241 Male, age 72, unknown 40.0
1941 Male, age 53, unknown 36.9
2590 Female, age 75, unknown 36.0
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 31.7
2699 Male, age 18, unknown 31.5
Superior colliculus
nTPM: 30.2
2587 Male, age 74, left hemisphere 37.2
1995 Male, age 72, unknown 35.0
2261 Male, age 18, unknown 35.0
2668 Female, age 75, unknown 34.7
2087 Female, age 72, unknown 34.4
1796 Male, age 53, unknown 29.9
1913 Female, age 42, unknown 29.5
1839 Male, age 51, unknown 24.5
1895 Male, age 76, right hemisphere 23.6
2664 Male, age 75, both hemispheres 18.3
Ventral tegmental area
nTPM: 34.2
2223 Female, age 72, unknown 47.4
1915 Female, age 42, unknown 39.0
2410 Female, age 72, unknown 38.3
2021 Male, age 53, unknown 28.8
2218 Male, age 76, both hemispheres 26.4
1942 Male, age 51, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 139

Max nTPM: 298.9
Min nTPM: 21.2
Std nTPM: 30.2
Median nTPM: 47.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 298.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 128.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 126.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 115.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 108.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 106.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 104.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 102.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 95.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 91.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.9
Samples: 4

Max nTPM: 34.5
Min nTPM: 20.1
Sample A Female 34.5
Sample B Female 25.8
Sample C Male 23.2
Sample D Male 20.1
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 21.2
Sample A Female 36.2
Sample B Female 36.7
Sample C Male 22.3
Sample D Male 21.2
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 34.4
Min nTPM: 21.3
Sample B Female 34.4
Sample C Male 28.1
Sample D Male 21.3
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 25.3
Sample A Female 40.5
Sample B Female 28.7
Sample C Male 33.6
Sample D Male 25.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.4
Sample A Male 12.3
Sample B Male 12.3
Sample C Female 12.9
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
74800915 Antisense, RP_060315_02_A08, Mouse strain C57BL/6J (56 days, male) 7.7
413770 Antisense, RP_040809_01_C01, Mouse strain C57BL/6J (56 days, male) 5.9

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