MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.0 nTPM
HPA Brain:79.7 nTPM
GTEx:81.0 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:72.7 nTPM
Mouse:15.9 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2219 Male, age 76, both hemispheres 74.5
2411 Female, age 72, unknown 73.1
2019 Male, age 18, unknown 67.3
2586 Male, age 75, left hemisphere 67.3
1827 Male, age 72, unknown 63.3
1833 Male, age 53, unknown 57.5
2828 Female, age 72, unknown 56.8
1830 Male, age 51, unknown 54.4
1870 Female, age 42, unknown 51.8
2666 Male, age 74, left hemisphere 50.8
Dorsal raphe nucleus
nTPM: 66.2
2298 Female, age 72, unknown 78.4
2047 Male, age 72, unknown 69.3
2750 Male, age 76, both hemispheres 67.3
1828 Male, age 53, unknown 62.9
2016 Female, age 72, unknown 52.9
Inferior colliculus
nTPM: 58.8
2097 Female, age 72, unknown 75.5
2849 Male, age 72, unknown 56.7
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 50.8
Median raphe nucleus
nTPM: 79.7
2220 Male, age 76, midline 79.7
Periaquaductal grey, anterior
nTPM: 71.6
1795 Male, age 51, unknown 76.4
1947 Male, age 18, unknown 69.8
2502 Female, age 75, unknown 68.6
Periaquaductal grey, dorsal
nTPM: 55.3
2850 Male, age 76, both hemispheres 58.1
1840 Male, age 53, unknown 57.0
1831 Male, age 72, unknown 55.2
2464 Female, age 72, unknown 51.0
Periaquaductal grey, lateral
nTPM: 64.1
2272 Male, age 74, both hemispheres 85.6
2140 Male, age 76, both hemispheres 55.0
2053 Male, age 18, unknown 51.8
Pretectal area
nTPM: 68.6
2007 Male, age 72, unknown 84.4
1817 Female, age 42, unknown 81.0
1816 Male, age 51, unknown 80.7
1944 Female, age 72, unknown 78.7
2273 Male, age 74, both hemispheres 75.3
2224 Female, age 72, unknown 74.4
1815 Male, age 53, unknown 68.4
2667 Female, age 75, unknown 64.7
2825 Male, age 18, unknown 57.2
2407 Male, age 75, both hemispheres 53.0
2316 Male, age 76, right hemisphere 36.9
Red nucleus
nTPM: 56.1
2725 Female, age 75, unknown 68.5
2785 Male, age 18, unknown 67.3
2503 Female, age 72, unknown 60.0
1904 Male, age 53, unknown 57.6
2769 Male, age 72, unknown 56.5
2584 Male, age 75, left hemisphere 55.9
2227 Male, age 72, unknown 55.4
1954 Female, age 42, unknown 54.9
1821 Female, age 72, unknown 54.4
1865 Male, age 51, unknown 51.4
2823 Male, age 76, right hemisphere 47.3
2588 Male, age 74, left hemisphere 44.1
Substantia nigra
nTPM: 69.1
1916 Female, age 42, unknown 96.4
1889 Female, age 72, unknown 82.2
1851 Male, age 51, unknown 75.6
1941 Male, age 53, unknown 74.2
2409 Female, age 72, unknown 67.1
2699 Male, age 18, unknown 65.9
2665 Male, age 74, both hemispheres 65.6
2241 Male, age 72, unknown 59.0
2583 Male, age 75, right hemisphere 54.5
2590 Female, age 75, unknown 50.8
Superior colliculus
nTPM: 62.7
1796 Male, age 53, unknown 78.6
2668 Female, age 75, unknown 72.8
2261 Male, age 18, unknown 69.7
2087 Female, age 72, unknown 63.3
2587 Male, age 74, left hemisphere 62.8
1839 Male, age 51, unknown 61.4
1913 Female, age 42, unknown 58.1
2664 Male, age 75, both hemispheres 57.3
1995 Male, age 72, unknown 52.8
1895 Male, age 76, right hemisphere 50.0
Ventral tegmental area
nTPM: 72.0
2218 Male, age 76, both hemispheres 84.0
2410 Female, age 72, unknown 82.2
1915 Female, age 42, unknown 77.5
2223 Female, age 72, unknown 66.9
1942 Male, age 51, unknown 61.4
2021 Male, age 53, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.0
Samples: 139

Max nTPM: 177.0
Min nTPM: 26.1
Std nTPM: 25.6
Median nTPM: 79.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 177.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 159.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 144.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 143.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 137.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 135.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 134.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 125.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 119.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 118.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.6
Samples: 4

Max nTPM: 94.7
Min nTPM: 42.0
Sample A Female 94.7
Sample B Female 56.4
Sample C Male 45.2
Sample D Male 42.0
Midbrain
nTPM: 67.2
Samples: 4

Max nTPM: 89.0
Min nTPM: 53.8
Sample A Female 89.0
Sample B Female 61.9
Sample C Male 63.9
Sample D Male 53.8
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 51.8
Min nTPM: 42.3
Sample B Female 49.4
Sample C Male 51.8
Sample D Male 42.3
Superior colliculi
nTPM: 72.7
Samples: 4

Max nTPM: 99.6
Min nTPM: 58.3
Sample A Female 99.6
Sample B Female 63.0
Sample C Male 69.7
Sample D Male 58.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.7
Sample A Male 17.5
Sample B Male 14.7
Sample C Female 15.7
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68745372 Antisense, RP_050210_01_G11, Mouse strain C57BL/6J (56 days, male) 2.3

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