MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:68.5 nTPM
GTEx:17.2 nTPM
FANTOM5:36.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
2019 Male, age 18, unknown 67.4
2219 Male, age 76, both hemispheres 63.6
1833 Male, age 53, unknown 63.1
2828 Female, age 72, unknown 62.0
1827 Male, age 72, unknown 61.4
1830 Male, age 51, unknown 59.5
2586 Male, age 75, left hemisphere 56.7
2411 Female, age 72, unknown 56.3
2666 Male, age 74, left hemisphere 55.4
1870 Female, age 42, unknown 48.6
Dorsal raphe nucleus
nTPM: 58.6
2047 Male, age 72, unknown 63.5
2750 Male, age 76, both hemispheres 62.0
2298 Female, age 72, unknown 56.4
2016 Female, age 72, unknown 56.2
1828 Male, age 53, unknown 54.9
Inferior colliculus
nTPM: 61.9
1890 Male, age 53, unknown 67.1
2849 Male, age 72, unknown 64.3
1848 Female, age 42, unknown 58.9
2097 Female, age 72, unknown 57.4
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Periaquaductal grey, anterior
nTPM: 59.3
1795 Male, age 51, unknown 64.9
1947 Male, age 18, unknown 58.5
2502 Female, age 75, unknown 54.5
Periaquaductal grey, dorsal
nTPM: 61.1
2850 Male, age 76, both hemispheres 64.2
1831 Male, age 72, unknown 63.3
2464 Female, age 72, unknown 62.4
1840 Male, age 53, unknown 54.3
Periaquaductal grey, lateral
nTPM: 66.7
2140 Male, age 76, both hemispheres 74.2
2272 Male, age 74, both hemispheres 69.2
2053 Male, age 18, unknown 56.8
Pretectal area
nTPM: 64.2
2316 Male, age 76, right hemisphere 78.4
2667 Female, age 75, unknown 67.5
1816 Male, age 51, unknown 66.1
2407 Male, age 75, both hemispheres 66.1
2273 Male, age 74, both hemispheres 64.7
1944 Female, age 72, unknown 63.3
2825 Male, age 18, unknown 62.6
2007 Male, age 72, unknown 61.5
1815 Male, age 53, unknown 59.7
2224 Female, age 72, unknown 58.9
1817 Female, age 42, unknown 57.5
Red nucleus
nTPM: 60.8
2823 Male, age 76, right hemisphere 73.1
2785 Male, age 18, unknown 65.1
2588 Male, age 74, left hemisphere 65.0
1954 Female, age 42, unknown 64.2
1904 Male, age 53, unknown 62.2
2503 Female, age 72, unknown 62.2
2725 Female, age 75, unknown 61.4
2584 Male, age 75, left hemisphere 59.3
1865 Male, age 51, unknown 56.8
2227 Male, age 72, unknown 56.2
2769 Male, age 72, unknown 54.6
1821 Female, age 72, unknown 49.9
Substantia nigra
nTPM: 57.4
1941 Male, age 53, unknown 66.4
2241 Male, age 72, unknown 60.4
2583 Male, age 75, right hemisphere 59.5
2590 Female, age 75, unknown 57.2
1889 Female, age 72, unknown 57.1
1916 Female, age 42, unknown 56.9
1851 Male, age 51, unknown 55.5
2699 Male, age 18, unknown 54.7
2409 Female, age 72, unknown 53.7
2665 Male, age 74, both hemispheres 52.5
Superior colliculus
nTPM: 60.3
2087 Female, age 72, unknown 72.7
1895 Male, age 76, right hemisphere 64.9
2261 Male, age 18, unknown 62.0
2664 Male, age 75, both hemispheres 61.5
2668 Female, age 75, unknown 61.0
1839 Male, age 51, unknown 58.7
1995 Male, age 72, unknown 58.1
1913 Female, age 42, unknown 55.6
2587 Male, age 74, left hemisphere 54.9
1796 Male, age 53, unknown 53.5
Ventral tegmental area
nTPM: 58.2
2218 Male, age 76, both hemispheres 65.4
2021 Male, age 53, unknown 60.5
1942 Male, age 51, unknown 57.3
2223 Female, age 72, unknown 56.4
1915 Female, age 42, unknown 55.7
2410 Female, age 72, unknown 53.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 22.8
Min nTPM: 10.1
Std nTPM: 2.5
Median nTPM: 17.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 22.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 21.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 21.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 21.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 21.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 20.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

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