MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:40.5 nTPM
GTEx:43.8 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:6.1 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2411 Female, age 72, unknown 41.2
1870 Female, age 42, unknown 38.7
2019 Male, age 18, unknown 38.2
1833 Male, age 53, unknown 37.0
1830 Male, age 51, unknown 36.6
1827 Male, age 72, unknown 34.8
2828 Female, age 72, unknown 33.2
2666 Male, age 74, left hemisphere 32.9
2586 Male, age 75, left hemisphere 32.5
2219 Male, age 76, both hemispheres 28.4
Dorsal raphe nucleus
nTPM: 36.7
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 38.7
2016 Female, age 72, unknown 36.7
1828 Male, age 53, unknown 35.1
2047 Male, age 72, unknown 34.1
Inferior colliculus
nTPM: 31.0
1890 Male, age 53, unknown 31.8
2097 Female, age 72, unknown 31.8
1848 Female, age 42, unknown 31.3
2849 Male, age 72, unknown 28.9
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 30.6
2502 Female, age 75, unknown 32.7
1795 Male, age 51, unknown 30.2
1947 Male, age 18, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 37.7
2464 Female, age 72, unknown 35.2
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 29.3
Periaquaductal grey, lateral
nTPM: 33.1
2140 Male, age 76, both hemispheres 34.7
2053 Male, age 18, unknown 34.2
2272 Male, age 74, both hemispheres 30.3
Pretectal area
nTPM: 34.0
2667 Female, age 75, unknown 38.4
1817 Female, age 42, unknown 37.4
1815 Male, age 53, unknown 36.4
2316 Male, age 76, right hemisphere 36.1
2007 Male, age 72, unknown 35.6
1816 Male, age 51, unknown 33.0
2825 Male, age 18, unknown 32.8
2273 Male, age 74, both hemispheres 32.3
2224 Female, age 72, unknown 32.1
2407 Male, age 75, both hemispheres 29.9
1944 Female, age 72, unknown 29.7
Red nucleus
nTPM: 40.5
1904 Male, age 53, unknown 46.3
1821 Female, age 72, unknown 46.2
1954 Female, age 42, unknown 44.2
1865 Male, age 51, unknown 43.6
2823 Male, age 76, right hemisphere 42.6
2503 Female, age 72, unknown 41.7
2785 Male, age 18, unknown 40.2
2769 Male, age 72, unknown 38.6
2588 Male, age 74, left hemisphere 37.9
2227 Male, age 72, unknown 37.8
2725 Female, age 75, unknown 37.7
2584 Male, age 75, left hemisphere 29.7
Substantia nigra
nTPM: 34.3
2409 Female, age 72, unknown 41.6
1889 Female, age 72, unknown 37.2
2699 Male, age 18, unknown 36.8
1851 Male, age 51, unknown 36.2
1916 Female, age 42, unknown 35.2
2241 Male, age 72, unknown 33.9
2583 Male, age 75, right hemisphere 31.4
1941 Male, age 53, unknown 30.9
2665 Male, age 74, both hemispheres 30.3
2590 Female, age 75, unknown 29.7
Superior colliculus
nTPM: 34.6
1913 Female, age 42, unknown 43.5
1995 Male, age 72, unknown 42.8
2587 Male, age 74, left hemisphere 36.7
1895 Male, age 76, right hemisphere 35.9
1796 Male, age 53, unknown 34.9
2668 Female, age 75, unknown 34.5
1839 Male, age 51, unknown 33.8
2261 Male, age 18, unknown 30.9
2087 Female, age 72, unknown 28.5
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 36.3
2410 Female, age 72, unknown 40.9
2223 Female, age 72, unknown 38.3
2218 Male, age 76, both hemispheres 36.9
2021 Male, age 53, unknown 35.1
1915 Female, age 42, unknown 34.8
1942 Male, age 51, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 139

Max nTPM: 85.7
Min nTPM: 23.7
Std nTPM: 10.2
Median nTPM: 41.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 85.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 84.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 74.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 64.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 59.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 59.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 6.0
Sample A Female 12.9
Sample B Female 6.6
Sample C Male 7.5
Sample D Male 6.0
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 15.4
Min nTPM: 5.8
Sample A Female 15.4
Sample B Female 7.6
Sample C Male 7.8
Sample D Male 5.8
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 7.5
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 6.7
Sample D Male 7.5
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.1
Sample A Female 11.5
Sample B Female 7.1
Sample C Male 8.1
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.4
Sample A Male 6.1
Sample B Male 5.4
Sample C Female 6.3
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69443349 Antisense, RP_050414_03_H07, Mouse strain C57BL/6J (56 days, male) 1.9

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