HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:48.9 nTPM
GTEx:38.9 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:87.9 nTPM
Mouse:23.4 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041511
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Hippocampus
nTPM: 48.8
1898 Male, age 80, left hemisphere 60.9
2148 Female, age 91, left hemisphere 56.5
2529 Female, age 94, left hemisphere 53.6
2621 Female, age 67, right hemisphere 50.4
1855 Male, age 76, left hemisphere 35.9
1911 Female, age 85, right hemisphere 35.7
Dentate gyrus
nTPM: 48.9
2530 Female, age 94, left hemisphere 59.9
2528 Male, age 74, both hemispheres 53.7
2531 Female, age 67, both hemispheres 51.5
1927 Female, age 91, both hemispheres 50.9
2246 Female, age 85, both hemispheres 39.7
2010 Male, age 76, both hemispheres 38.0
Entorhinal gyrus
nTPM: 47.9
2686 Male, age 75, right hemisphere 55.3
2764 Male, age 80, right hemisphere 52.0
2117 Female, age 91, right hemisphere 51.4
2613 Female, age 94, left hemisphere 49.7
1787 Male, age 76, left hemisphere 40.9
1938 Female, age 85, left hemisphere 38.0
Hippocampus, CA1
nTPM: 44.6
2749 Male, age 80, left hemisphere 55.2
2527 Male, age 74, both hemispheres 47.3
1873 Female, age 85, both hemispheres 41.2
2082 Female, age 91, right hemisphere 40.7
2045 Male, age 76, both hemispheres 38.4
Hippocampus, CA2
nTPM: 47.1
2437 Female, age 94, left hemisphere 55.8
1963 Male, age 80, left hemisphere 54.9
1892 Male, age 76, both hemispheres 45.4
2249 Male, age 74, both hemispheres 44.1
1940 Female, age 85, left hemisphere 42.4
2113 Female, age 91, right hemisphere 40.0
Hippocampus, CA3
nTPM: 48.3
2861 Female, age 67, both hemispheres 65.2
2620 Female, age 94, left hemisphere 50.6
2436 Male, age 74, both hemispheres 48.2
1867 Male, age 76, both hemispheres 44.7
2137 Male, age 80, left hemisphere 43.8
1891 Female, age 85, both hemispheres 37.5
Parahippocampal cortex
nTPM: 43.9
2622 Female, age 67, right hemisphere 54.3
2692 Male, age 74, both hemispheres 48.0
1990 Female, age 91, right hemisphere 47.7
2245 Female, age 91, both hemispheres 46.7
2250 Female, age 67, right hemisphere 45.7
1850 Male, age 80, both hemispheres 43.3
2532 Female, age 72, left hemisphere 41.0
1933 Female, age 85, both hemispheres 38.4
2693 Female, age 94, both hemispheres 37.7
2018 Male, age 76, both hemispheres 36.6
Perirhinal gyrus
nTPM: 43.8
1794 Male, age 80, right hemisphere 55.2
1847 Female, age 91, left hemisphere 48.3
2521 Female, age 94, right hemisphere 42.8
1841 Female, age 85, right hemisphere 38.2
2848 Male, age 76, right hemisphere 34.4
Subiculum
nTPM: 45.4
2619 Male, age 74, both hemispheres 51.4
2438 Female, age 94, left hemisphere 50.3
2729 Female, age 91, right hemisphere 49.4
1901 Male, age 80, both hemispheres 46.9
1977 Female, age 85, both hemispheres 45.1
2042 Male, age 76, both hemispheres 29.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.9
Samples: 197

Max nTPM: 89.5
Min nTPM: 15.4
Std nTPM: 11.2
Median nTPM: 37.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 89.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 76.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 69.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 68.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 65.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 64.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 64.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 64.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 64.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 63.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 62.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.8
FF:10169-103B7 60 years, female 17.6
FF:10153-102I9 76 years, female 16.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.9
Pig sample Sample description nTPM
Subiculum
nTPM: 64.5
Samples: 4

Max nTPM: 85.7
Min nTPM: 49.7
Sample A Female 85.7
Sample B Female 61.0
Sample C Male 49.7
Sample D Male 61.7
Dorsal hippocampus
nTPM: 87.9
Samples: 4

Max nTPM: 124.4
Min nTPM: 62.3
Sample A Female 124.4
Sample B Female 89.7
Sample C Male 75.2
Sample D Male 62.3
Entorhinal cortex
nTPM: 69.4
Samples: 4

Max nTPM: 80.3
Min nTPM: 44.1
Sample A Female 80.3
Sample B Female 76.3
Sample C Male 76.9
Sample D Male 44.1
Ventral hippocampus
nTPM: 79.3
Samples: 4

Max nTPM: 95.1
Min nTPM: 62.8
Sample A Female 86.5
Sample B Female 62.8
Sample C Male 95.1
Sample D Male 72.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 19.6
Sample A Male 21.8
Sample B Male 27.0
Sample C Female 22.2
Sample D Female 19.6
Hippocampal formation
nTPM: 23.4
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 22.0
Sample C Female 24.8
Sample D Female 26.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
70431289 Antisense, RP_050614_02_E08, Mouse strain C57BL/6J (56 days, male) 2.2
73930841 Antisense, RP_051214_04_D03, Mouse strain C57BL/6J (56 days, male) 0.5

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