MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.3 nTPM
HPA Brain:77.1 nTPM
GTEx:55.3 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:107.6 nTPM
Mouse:24.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.4
2019 Male, age 18, unknown 125.7
2586 Male, age 75, left hemisphere 108.7
2666 Male, age 74, left hemisphere 74.1
2828 Female, age 72, unknown 63.7
2219 Male, age 76, both hemispheres 59.5
2411 Female, age 72, unknown 59.4
1827 Male, age 72, unknown 58.4
1830 Male, age 51, unknown 54.6
1833 Male, age 53, unknown 53.1
1870 Female, age 42, unknown 46.7
Dorsal raphe nucleus
nTPM: 63.7
1828 Male, age 53, unknown 84.7
2047 Male, age 72, unknown 69.9
2298 Female, age 72, unknown 55.6
2016 Female, age 72, unknown 55.1
2750 Male, age 76, both hemispheres 53.3
Inferior colliculus
nTPM: 63.1
1890 Male, age 53, unknown 73.4
2097 Female, age 72, unknown 66.4
1848 Female, age 42, unknown 60.1
2849 Male, age 72, unknown 52.5
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 65.8
2502 Female, age 75, unknown 73.6
1795 Male, age 51, unknown 66.7
1947 Male, age 18, unknown 57.3
Periaquaductal grey, dorsal
nTPM: 46.2
2464 Female, age 72, unknown 56.5
1840 Male, age 53, unknown 46.7
1831 Male, age 72, unknown 42.1
2850 Male, age 76, both hemispheres 39.5
Periaquaductal grey, lateral
nTPM: 44.9
2272 Male, age 74, both hemispheres 53.1
2140 Male, age 76, both hemispheres 45.7
2053 Male, age 18, unknown 35.9
Pretectal area
nTPM: 71.1
2007 Male, age 72, unknown 120.5
1817 Female, age 42, unknown 111.3
1816 Male, age 51, unknown 89.9
1944 Female, age 72, unknown 85.4
1815 Male, age 53, unknown 74.8
2667 Female, age 75, unknown 55.0
2407 Male, age 75, both hemispheres 54.2
2273 Male, age 74, both hemispheres 49.4
2316 Male, age 76, right hemisphere 48.3
2224 Female, age 72, unknown 48.2
2825 Male, age 18, unknown 45.0
Red nucleus
nTPM: 76.7
2785 Male, age 18, unknown 116.5
2588 Male, age 74, left hemisphere 89.1
2227 Male, age 72, unknown 80.1
1821 Female, age 72, unknown 79.8
1954 Female, age 42, unknown 78.6
2769 Male, age 72, unknown 77.9
2503 Female, age 72, unknown 77.4
1865 Male, age 51, unknown 70.8
1904 Male, age 53, unknown 66.5
2584 Male, age 75, left hemisphere 66.1
2725 Female, age 75, unknown 59.8
2823 Male, age 76, right hemisphere 57.9
Substantia nigra
nTPM: 77.1
1916 Female, age 42, unknown 95.2
2665 Male, age 74, both hemispheres 91.6
1851 Male, age 51, unknown 85.1
1941 Male, age 53, unknown 84.1
1889 Female, age 72, unknown 82.7
2583 Male, age 75, right hemisphere 79.8
2590 Female, age 75, unknown 66.1
2241 Male, age 72, unknown 64.2
2409 Female, age 72, unknown 63.2
2699 Male, age 18, unknown 58.6
Superior colliculus
nTPM: 61.6
2668 Female, age 75, unknown 94.3
2664 Male, age 75, both hemispheres 83.7
2087 Female, age 72, unknown 68.2
1895 Male, age 76, right hemisphere 56.8
2261 Male, age 18, unknown 55.9
1839 Male, age 51, unknown 55.3
1796 Male, age 53, unknown 55.0
2587 Male, age 74, left hemisphere 53.8
1995 Male, age 72, unknown 47.9
1913 Female, age 42, unknown 44.9
Ventral tegmental area
nTPM: 63.5
2410 Female, age 72, unknown 86.2
1915 Female, age 42, unknown 73.3
2218 Male, age 76, both hemispheres 60.6
1942 Male, age 51, unknown 57.7
2223 Female, age 72, unknown 54.4
2021 Male, age 53, unknown 48.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.3
Samples: 139

Max nTPM: 128.9
Min nTPM: 24.0
Std nTPM: 17.8
Median nTPM: 54.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 111.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 96.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 90.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 88.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 86.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 85.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 82.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.6
FF:10158-103A5 76 years, female 16.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 4

Max nTPM: 117.8
Min nTPM: 75.3
Sample A Female 117.8
Sample B Female 80.7
Sample C Male 82.3
Sample D Male 75.3
Midbrain
nTPM: 95.1
Samples: 4

Max nTPM: 99.6
Min nTPM: 83.7
Sample A Female 99.4
Sample B Female 83.7
Sample C Male 97.8
Sample D Male 99.6
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 95.9
Min nTPM: 68.1
Sample B Female 73.3
Sample C Male 95.9
Sample D Male 68.1
Superior colliculi
nTPM: 107.7
Samples: 4

Max nTPM: 124.7
Min nTPM: 90.8
Sample A Female 124.7
Sample B Female 92.3
Sample C Male 122.9
Sample D Male 90.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 22.9
Sample A Male 28.5
Sample B Male 23.2
Sample C Female 22.9
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70431289 Antisense, RP_050614_02_E08, Mouse strain C57BL/6J (56 days, male) 1.9
73930841 Antisense, RP_051214_04_D03, Mouse strain C57BL/6J (56 days, male) 0.9

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