MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:32.6 nTPM
GTEx:21.1 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Mouse:6.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.7
2586 Male, age 75, left hemisphere 33.3
2019 Male, age 18, unknown 33.0
1827 Male, age 72, unknown 31.3
2828 Female, age 72, unknown 30.7
2411 Female, age 72, unknown 30.3
2666 Male, age 74, left hemisphere 28.4
2219 Male, age 76, both hemispheres 28.2
1833 Male, age 53, unknown 28.1
1830 Male, age 51, unknown 27.0
1870 Female, age 42, unknown 26.9
Dorsal raphe nucleus
nTPM: 32.3
2298 Female, age 72, unknown 37.8
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.1
1828 Male, age 53, unknown 29.6
2016 Female, age 72, unknown 29.0
Inferior colliculus
nTPM: 28.3
2097 Female, age 72, unknown 29.8
1848 Female, age 42, unknown 29.2
1890 Male, age 53, unknown 28.8
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Periaquaductal grey, anterior
nTPM: 32.6
1795 Male, age 51, unknown 35.3
1947 Male, age 18, unknown 33.7
2502 Female, age 75, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 27.4
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 27.6
1840 Male, age 53, unknown 26.9
2850 Male, age 76, both hemispheres 26.3
Periaquaductal grey, lateral
nTPM: 31.5
2272 Male, age 74, both hemispheres 34.7
2053 Male, age 18, unknown 30.7
2140 Male, age 76, both hemispheres 29.0
Pretectal area
nTPM: 31.3
2273 Male, age 74, both hemispheres 36.2
2667 Female, age 75, unknown 35.4
1816 Male, age 51, unknown 34.0
1944 Female, age 72, unknown 33.1
1817 Female, age 42, unknown 31.6
2007 Male, age 72, unknown 31.2
1815 Male, age 53, unknown 30.4
2407 Male, age 75, both hemispheres 30.4
2224 Female, age 72, unknown 28.6
2316 Male, age 76, right hemisphere 27.0
2825 Male, age 18, unknown 26.6
Red nucleus
nTPM: 29.7
1904 Male, age 53, unknown 32.4
2503 Female, age 72, unknown 31.9
2725 Female, age 75, unknown 31.3
2823 Male, age 76, right hemisphere 31.3
2227 Male, age 72, unknown 30.6
1954 Female, age 42, unknown 30.3
2769 Male, age 72, unknown 30.1
1821 Female, age 72, unknown 30.0
1865 Male, age 51, unknown 28.2
2785 Male, age 18, unknown 27.6
2584 Male, age 75, left hemisphere 26.9
2588 Male, age 74, left hemisphere 25.9
Substantia nigra
nTPM: 31.0
1916 Female, age 42, unknown 36.6
1851 Male, age 51, unknown 33.2
2409 Female, age 72, unknown 31.9
2665 Male, age 74, both hemispheres 30.9
1889 Female, age 72, unknown 30.7
2590 Female, age 75, unknown 30.4
1941 Male, age 53, unknown 29.9
2699 Male, age 18, unknown 29.2
2241 Male, age 72, unknown 29.0
2583 Male, age 75, right hemisphere 28.1
Superior colliculus
nTPM: 29.9
2261 Male, age 18, unknown 34.9
2087 Female, age 72, unknown 33.6
1796 Male, age 53, unknown 33.4
2587 Male, age 74, left hemisphere 31.7
1995 Male, age 72, unknown 29.2
2668 Female, age 75, unknown 28.6
1913 Female, age 42, unknown 27.5
1895 Male, age 76, right hemisphere 27.0
1839 Male, age 51, unknown 26.7
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 30.6
2410 Female, age 72, unknown 32.4
1915 Female, age 42, unknown 32.0
1942 Male, age 51, unknown 30.8
2021 Male, age 53, unknown 30.4
2223 Female, age 72, unknown 29.2
2218 Male, age 76, both hemispheres 28.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 40.0
Min nTPM: 9.8
Std nTPM: 4.2
Median nTPM: 21.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 40.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 30.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 30.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 30.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 27.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 27.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.0
Sample A Male 6.9
Sample B Male 5.9
Sample C Female 5.0
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68446093 Antisense, RP_050113_01_E05, Mouse strain C57BL/6J (56 days, male) 0.6

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