MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:34.6 nTPM
GTEx:13.7 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:65.4 nTPM
Mouse:89.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
1827 Male, age 72, unknown 41.0
2586 Male, age 75, left hemisphere 39.1
2019 Male, age 18, unknown 31.9
2411 Female, age 72, unknown 30.9
1870 Female, age 42, unknown 30.8
2828 Female, age 72, unknown 30.3
1833 Male, age 53, unknown 28.4
2219 Male, age 76, both hemispheres 28.2
1830 Male, age 51, unknown 25.4
2666 Male, age 74, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 29.2
2047 Male, age 72, unknown 40.3
2298 Female, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 29.0
1828 Male, age 53, unknown 23.3
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 28.4
1848 Female, age 42, unknown 30.7
2097 Female, age 72, unknown 29.6
2849 Male, age 72, unknown 27.4
1890 Male, age 53, unknown 25.9
Median raphe nucleus
nTPM: 28.6
2220 Male, age 76, midline 28.6
Periaquaductal grey, anterior
nTPM: 34.5
1947 Male, age 18, unknown 44.4
1795 Male, age 51, unknown 34.4
2502 Female, age 75, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 27.1
1831 Male, age 72, unknown 32.4
1840 Male, age 53, unknown 27.9
2850 Male, age 76, both hemispheres 24.0
2464 Female, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 28.4
2053 Male, age 18, unknown 34.9
2272 Male, age 74, both hemispheres 27.9
2140 Male, age 76, both hemispheres 22.2
Pretectal area
nTPM: 34.6
2407 Male, age 75, both hemispheres 48.4
1816 Male, age 51, unknown 47.5
1817 Female, age 42, unknown 40.3
1944 Female, age 72, unknown 38.9
1815 Male, age 53, unknown 34.4
2667 Female, age 75, unknown 33.5
2007 Male, age 72, unknown 31.1
2316 Male, age 76, right hemisphere 28.7
2224 Female, age 72, unknown 28.0
2825 Male, age 18, unknown 27.2
2273 Male, age 74, both hemispheres 22.8
Red nucleus
nTPM: 29.4
2588 Male, age 74, left hemisphere 39.2
2584 Male, age 75, left hemisphere 37.7
2503 Female, age 72, unknown 32.7
2725 Female, age 75, unknown 32.6
1904 Male, age 53, unknown 29.6
1821 Female, age 72, unknown 29.3
1865 Male, age 51, unknown 28.9
1954 Female, age 42, unknown 25.8
2785 Male, age 18, unknown 25.5
2823 Male, age 76, right hemisphere 25.3
2227 Male, age 72, unknown 23.2
2769 Male, age 72, unknown 22.6
Substantia nigra
nTPM: 32.2
2583 Male, age 75, right hemisphere 46.4
1941 Male, age 53, unknown 37.6
1889 Female, age 72, unknown 36.0
2409 Female, age 72, unknown 32.4
1851 Male, age 51, unknown 31.7
2590 Female, age 75, unknown 30.9
2665 Male, age 74, both hemispheres 29.5
1916 Female, age 42, unknown 27.8
2241 Male, age 72, unknown 26.6
2699 Male, age 18, unknown 22.8
Superior colliculus
nTPM: 30.6
2668 Female, age 75, unknown 37.2
1895 Male, age 76, right hemisphere 35.8
2261 Male, age 18, unknown 33.8
2587 Male, age 74, left hemisphere 33.7
1796 Male, age 53, unknown 33.2
1839 Male, age 51, unknown 30.1
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 27.9
2087 Female, age 72, unknown 27.5
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 28.5
1915 Female, age 42, unknown 32.5
2223 Female, age 72, unknown 30.7
2021 Male, age 53, unknown 28.6
2410 Female, age 72, unknown 28.0
2218 Male, age 76, both hemispheres 27.6
1942 Male, age 51, unknown 23.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 139

Max nTPM: 31.2
Min nTPM: 4.7
Std nTPM: 5.3
Median nTPM: 12.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 25.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 24.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 23.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.6
Samples: 4

Max nTPM: 63.2
Min nTPM: 59.4
Sample A Female 63.1
Sample B Female 59.4
Sample C Male 60.8
Sample D Male 63.2
Midbrain
nTPM: 65.4
Samples: 4

Max nTPM: 88.8
Min nTPM: 42.1
Sample A Female 66.8
Sample B Female 63.9
Sample C Male 88.8
Sample D Male 42.1
Periaqueductal gray
nTPM: 56.9
Samples: 3

Max nTPM: 61.5
Min nTPM: 47.7
Sample B Female 61.5
Sample C Male 61.4
Sample D Male 47.7
Superior colliculi
nTPM: 59.5
Samples: 4

Max nTPM: 82.4
Min nTPM: 49.5
Sample A Female 51.8
Sample B Female 49.5
Sample C Male 82.4
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.4
Samples: 4

Max nTPM: 94.0
Min nTPM: 81.0
Sample A Male 93.2
Sample B Male 94.0
Sample C Female 81.0
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70539166 Antisense, RP_050324_02_B12, Mouse strain C57BL/6J (56 days, male) 0.4

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