MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:77.7 nTPM
GTEx:28.9 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:13.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.0
2586 Male, age 75, left hemisphere 99.5
2828 Female, age 72, unknown 76.8
2666 Male, age 74, left hemisphere 67.8
1827 Male, age 72, unknown 66.9
2411 Female, age 72, unknown 56.5
2219 Male, age 76, both hemispheres 54.9
1870 Female, age 42, unknown 53.8
1833 Male, age 53, unknown 53.5
1830 Male, age 51, unknown 46.8
2019 Male, age 18, unknown 43.7
Dorsal raphe nucleus
nTPM: 56.3
2047 Male, age 72, unknown 63.5
2298 Female, age 72, unknown 57.5
1828 Male, age 53, unknown 54.7
2016 Female, age 72, unknown 54.0
2750 Male, age 76, both hemispheres 51.6
Inferior colliculus
nTPM: 56.2
2849 Male, age 72, unknown 59.5
2097 Female, age 72, unknown 56.0
1848 Female, age 42, unknown 55.9
1890 Male, age 53, unknown 53.2
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Periaquaductal grey, anterior
nTPM: 77.7
1795 Male, age 51, unknown 79.7
2502 Female, age 75, unknown 78.1
1947 Male, age 18, unknown 75.2
Periaquaductal grey, dorsal
nTPM: 55.7
2464 Female, age 72, unknown 68.2
1840 Male, age 53, unknown 57.7
1831 Male, age 72, unknown 49.2
2850 Male, age 76, both hemispheres 47.7
Periaquaductal grey, lateral
nTPM: 55.0
2053 Male, age 18, unknown 62.2
2140 Male, age 76, both hemispheres 58.5
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 58.8
2316 Male, age 76, right hemisphere 68.3
2825 Male, age 18, unknown 66.9
2407 Male, age 75, both hemispheres 65.2
2224 Female, age 72, unknown 64.0
1816 Male, age 51, unknown 60.9
2667 Female, age 75, unknown 60.8
2007 Male, age 72, unknown 57.9
1944 Female, age 72, unknown 54.8
1815 Male, age 53, unknown 51.7
2273 Male, age 74, both hemispheres 48.7
1817 Female, age 42, unknown 47.9
Red nucleus
nTPM: 50.3
2588 Male, age 74, left hemisphere 67.1
2725 Female, age 75, unknown 59.2
2769 Male, age 72, unknown 57.8
2227 Male, age 72, unknown 55.6
2584 Male, age 75, left hemisphere 55.4
2503 Female, age 72, unknown 50.0
1954 Female, age 42, unknown 47.8
2785 Male, age 18, unknown 46.5
1904 Male, age 53, unknown 45.9
2823 Male, age 76, right hemisphere 40.2
1821 Female, age 72, unknown 38.8
1865 Male, age 51, unknown 38.8
Substantia nigra
nTPM: 46.8
2665 Male, age 74, both hemispheres 62.0
1941 Male, age 53, unknown 53.4
1851 Male, age 51, unknown 52.8
1916 Female, age 42, unknown 48.4
2699 Male, age 18, unknown 47.9
1889 Female, age 72, unknown 46.4
2583 Male, age 75, right hemisphere 45.0
2590 Female, age 75, unknown 39.9
2241 Male, age 72, unknown 38.5
2409 Female, age 72, unknown 34.3
Superior colliculus
nTPM: 58.7
2664 Male, age 75, both hemispheres 93.3
1796 Male, age 53, unknown 65.1
2261 Male, age 18, unknown 64.3
1839 Male, age 51, unknown 58.6
1895 Male, age 76, right hemisphere 54.5
2587 Male, age 74, left hemisphere 54.1
2087 Female, age 72, unknown 54.0
2668 Female, age 75, unknown 53.2
1913 Female, age 42, unknown 44.7
1995 Male, age 72, unknown 44.6
Ventral tegmental area
nTPM: 52.0
1942 Male, age 51, unknown 67.8
2021 Male, age 53, unknown 55.8
1915 Female, age 42, unknown 49.4
2218 Male, age 76, both hemispheres 48.7
2410 Female, age 72, unknown 45.5
2223 Female, age 72, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 58.0
Min nTPM: 6.0
Std nTPM: 10.7
Median nTPM: 28.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 58.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 55.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 51.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 51.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 50.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 49.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 49.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 46.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 46.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.5
Samples: 4

Max nTPM: 6.5
Min nTPM: 1.8
Sample A Female 6.5
Sample B Female 3.2
Sample C Male 6.4
Sample D Male 1.8
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.9
Sample C Male 7.1
Sample D Male 8.3
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 8.8
Min nTPM: 6.1
Sample B Female 6.2
Sample C Male 8.8
Sample D Male 6.1
Superior colliculi
nTPM: 5.2
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.4
Sample A Female 6.4
Sample B Female 2.4
Sample C Male 4.8
Sample D Male 7.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.2
Sample A Male 14.2
Sample B Male 13.4
Sample C Female 14.6
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71211764 Antisense, RP_050816_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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