MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.6 nTPM
HPA Brain:11.2 nTPM
GTEx:4.6 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:10.3 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.9
2019 Male, age 18, unknown 17.1
1870 Female, age 42, unknown 13.3
2411 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 11.0
1833 Male, age 53, unknown 10.3
1827 Male, age 72, unknown 10.1
1830 Male, age 51, unknown 9.7
2828 Female, age 72, unknown 8.4
2666 Male, age 74, left hemisphere 8.3
2586 Male, age 75, left hemisphere 7.1
Dorsal raphe nucleus
nTPM: 9.2
1828 Male, age 53, unknown 10.2
2750 Male, age 76, both hemispheres 9.7
2047 Male, age 72, unknown 9.2
2016 Female, age 72, unknown 8.6
2298 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 10.0
1848 Female, age 42, unknown 12.2
1890 Male, age 53, unknown 9.9
2097 Female, age 72, unknown 9.8
2849 Male, age 72, unknown 8.1
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Periaquaductal grey, anterior
nTPM: 8.4
2502 Female, age 75, unknown 9.4
1947 Male, age 18, unknown 8.3
1795 Male, age 51, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 7.8
1840 Male, age 53, unknown 8.5
1831 Male, age 72, unknown 8.4
2464 Female, age 72, unknown 8.2
2850 Male, age 76, both hemispheres 6.2
Periaquaductal grey, lateral
nTPM: 7.3
2272 Male, age 74, both hemispheres 8.7
2053 Male, age 18, unknown 8.0
2140 Male, age 76, both hemispheres 5.3
Pretectal area
nTPM: 10.9
2007 Male, age 72, unknown 15.1
2667 Female, age 75, unknown 15.1
1817 Female, age 42, unknown 12.5
1816 Male, age 51, unknown 12.1
1944 Female, age 72, unknown 11.9
1815 Male, age 53, unknown 11.1
2316 Male, age 76, right hemisphere 10.4
2224 Female, age 72, unknown 8.8
2273 Male, age 74, both hemispheres 8.4
2825 Male, age 18, unknown 7.4
2407 Male, age 75, both hemispheres 6.9
Red nucleus
nTPM: 10.8
1821 Female, age 72, unknown 15.4
2503 Female, age 72, unknown 13.7
2785 Male, age 18, unknown 12.8
1865 Male, age 51, unknown 12.1
2588 Male, age 74, left hemisphere 10.8
1904 Male, age 53, unknown 10.4
1954 Female, age 42, unknown 10.3
2227 Male, age 72, unknown 10.3
2769 Male, age 72, unknown 9.8
2823 Male, age 76, right hemisphere 9.3
2725 Female, age 75, unknown 8.4
2584 Male, age 75, left hemisphere 6.7
Substantia nigra
nTPM: 11.2
2409 Female, age 72, unknown 28.2
1941 Male, age 53, unknown 11.7
1889 Female, age 72, unknown 11.5
2241 Male, age 72, unknown 11.3
2583 Male, age 75, right hemisphere 9.3
1916 Female, age 42, unknown 9.2
1851 Male, age 51, unknown 9.1
2590 Female, age 75, unknown 9.0
2699 Male, age 18, unknown 6.4
2665 Male, age 74, both hemispheres 6.2
Superior colliculus
nTPM: 9.3
1895 Male, age 76, right hemisphere 14.3
1913 Female, age 42, unknown 10.6
1839 Male, age 51, unknown 10.4
2261 Male, age 18, unknown 9.4
2087 Female, age 72, unknown 9.3
2587 Male, age 74, left hemisphere 9.1
1796 Male, age 53, unknown 8.3
2668 Female, age 75, unknown 8.1
1995 Male, age 72, unknown 7.6
2664 Male, age 75, both hemispheres 5.8
Ventral tegmental area
nTPM: 9.6
2410 Female, age 72, unknown 14.2
1915 Female, age 42, unknown 9.7
2218 Male, age 76, both hemispheres 9.3
1942 Male, age 51, unknown 8.6
2223 Female, age 72, unknown 8.5
2021 Male, age 53, unknown 7.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.6
Samples: 139

Max nTPM: 12.8
Min nTPM: 2.3
Std nTPM: 1.8
Median nTPM: 4.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 9.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 9.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 8.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 8.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 8.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 36.2
Min nTPM: 13.9
Sample A Female 36.2
Sample B Female 17.0
Sample C Male 22.3
Sample D Male 13.9
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 33.9
Min nTPM: 20.9
Sample A Female 22.1
Sample B Female 21.9
Sample C Male 33.9
Sample D Male 20.9
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 15.8
Min nTPM: 15.3
Sample B Female 15.7
Sample C Male 15.8
Sample D Male 15.3
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 36.3
Min nTPM: 16.4
Sample A Female 24.4
Sample B Female 16.4
Sample C Male 36.3
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.5
Sample A Male 9.5
Sample B Male 10.4
Sample C Female 10.9
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70546024 Antisense, RP_050623_03_D12, Mouse strain C57BL/6J (56 days, male) 0.9
74988611 Antisense, RP_060315_05_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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