MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:20.5 nTPM
GTEx:25.5 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Mouse:15.4 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
1870 Female, age 42, unknown 21.2
2219 Male, age 76, both hemispheres 21.0
2411 Female, age 72, unknown 19.9
1830 Male, age 51, unknown 19.1
1833 Male, age 53, unknown 18.9
2828 Female, age 72, unknown 18.6
1827 Male, age 72, unknown 17.9
2019 Male, age 18, unknown 17.6
2666 Male, age 74, left hemisphere 17.2
2586 Male, age 75, left hemisphere 12.8
Dorsal raphe nucleus
nTPM: 19.2
2016 Female, age 72, unknown 20.7
2750 Male, age 76, both hemispheres 20.3
1828 Male, age 53, unknown 19.8
2298 Female, age 72, unknown 18.0
2047 Male, age 72, unknown 17.3
Inferior colliculus
nTPM: 19.5
2849 Male, age 72, unknown 21.6
1848 Female, age 42, unknown 21.5
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 18.4
1947 Male, age 18, unknown 20.1
2502 Female, age 75, unknown 17.7
1795 Male, age 51, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 20.4
2850 Male, age 76, both hemispheres 23.4
1831 Male, age 72, unknown 21.1
1840 Male, age 53, unknown 18.9
2464 Female, age 72, unknown 18.2
Periaquaductal grey, lateral
nTPM: 19.6
2272 Male, age 74, both hemispheres 20.8
2140 Male, age 76, both hemispheres 20.2
2053 Male, age 18, unknown 17.9
Pretectal area
nTPM: 19.2
2273 Male, age 74, both hemispheres 22.9
2407 Male, age 75, both hemispheres 21.0
1817 Female, age 42, unknown 20.3
1815 Male, age 53, unknown 19.7
2224 Female, age 72, unknown 19.6
2667 Female, age 75, unknown 19.6
1944 Female, age 72, unknown 18.7
2316 Male, age 76, right hemisphere 18.4
1816 Male, age 51, unknown 17.9
2825 Male, age 18, unknown 17.3
2007 Male, age 72, unknown 16.3
Red nucleus
nTPM: 19.2
1821 Female, age 72, unknown 22.5
1865 Male, age 51, unknown 20.6
2725 Female, age 75, unknown 20.0
2769 Male, age 72, unknown 20.0
1954 Female, age 42, unknown 19.8
2785 Male, age 18, unknown 19.7
1904 Male, age 53, unknown 19.5
2227 Male, age 72, unknown 19.2
2503 Female, age 72, unknown 19.0
2823 Male, age 76, right hemisphere 18.4
2588 Male, age 74, left hemisphere 16.3
2584 Male, age 75, left hemisphere 15.0
Substantia nigra
nTPM: 18.6
2699 Male, age 18, unknown 21.6
1941 Male, age 53, unknown 20.9
1889 Female, age 72, unknown 20.7
1916 Female, age 42, unknown 19.4
2241 Male, age 72, unknown 19.4
2590 Female, age 75, unknown 19.2
1851 Male, age 51, unknown 18.6
2583 Male, age 75, right hemisphere 16.7
2665 Male, age 74, both hemispheres 16.1
2409 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 19.0
2587 Male, age 74, left hemisphere 21.1
1913 Female, age 42, unknown 20.8
1895 Male, age 76, right hemisphere 20.4
1839 Male, age 51, unknown 19.8
1995 Male, age 72, unknown 19.6
2664 Male, age 75, both hemispheres 18.7
1796 Male, age 53, unknown 18.0
2261 Male, age 18, unknown 18.0
2668 Female, age 75, unknown 17.6
2087 Female, age 72, unknown 16.2
Ventral tegmental area
nTPM: 18.8
2218 Male, age 76, both hemispheres 22.3
2410 Female, age 72, unknown 18.8
2223 Female, age 72, unknown 18.3
2021 Male, age 53, unknown 18.0
1942 Male, age 51, unknown 17.9
1915 Female, age 42, unknown 17.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 55.1
Min nTPM: 15.1
Std nTPM: 5.8
Median nTPM: 24.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 55.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 38.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 37.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 34.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 34.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 16.7
Min nTPM: 14.2
Sample A Male 16.7
Sample B Male 14.2
Sample C Female 15.2
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69236604 Antisense, RP_050329_04_A07, Mouse strain C57BL/6J (56 days, male) 3.4

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