MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:59.7 nTPM
GTEx:17.0 nTPM
FANTOM5:184.6 Scaled Tags Per Million
Pig:99.6 nTPM
Mouse:36.8 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
1830 Male, age 51, unknown 55.8
2219 Male, age 76, both hemispheres 50.3
2828 Female, age 72, unknown 49.8
1870 Female, age 42, unknown 41.9
1833 Male, age 53, unknown 40.7
2019 Male, age 18, unknown 40.7
2666 Male, age 74, left hemisphere 39.7
2411 Female, age 72, unknown 37.5
1827 Male, age 72, unknown 36.8
2586 Male, age 75, left hemisphere 29.5
Dorsal raphe nucleus
nTPM: 53.3
2298 Female, age 72, unknown 68.9
2016 Female, age 72, unknown 65.0
1828 Male, age 53, unknown 48.5
2750 Male, age 76, both hemispheres 43.9
2047 Male, age 72, unknown 40.2
Inferior colliculus
nTPM: 41.2
2849 Male, age 72, unknown 44.8
2097 Female, age 72, unknown 44.6
1890 Male, age 53, unknown 40.5
1848 Female, age 42, unknown 34.9
Median raphe nucleus
nTPM: 48.1
2220 Male, age 76, midline 48.1
Periaquaductal grey, anterior
nTPM: 34.1
1795 Male, age 51, unknown 42.1
2502 Female, age 75, unknown 30.8
1947 Male, age 18, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 56.8
1831 Male, age 72, unknown 69.6
2850 Male, age 76, both hemispheres 67.9
2464 Female, age 72, unknown 46.4
1840 Male, age 53, unknown 43.1
Periaquaductal grey, lateral
nTPM: 59.1
2272 Male, age 74, both hemispheres 67.8
2140 Male, age 76, both hemispheres 65.9
2053 Male, age 18, unknown 43.7
Pretectal area
nTPM: 48.3
2316 Male, age 76, right hemisphere 69.1
2224 Female, age 72, unknown 68.0
2407 Male, age 75, both hemispheres 65.3
2273 Male, age 74, both hemispheres 62.9
1815 Male, age 53, unknown 46.0
2667 Female, age 75, unknown 43.8
1817 Female, age 42, unknown 43.6
2825 Male, age 18, unknown 38.0
1944 Female, age 72, unknown 36.8
2007 Male, age 72, unknown 36.6
1816 Male, age 51, unknown 21.3
Red nucleus
nTPM: 38.5
1865 Male, age 51, unknown 54.4
1904 Male, age 53, unknown 48.6
2503 Female, age 72, unknown 44.7
2785 Male, age 18, unknown 42.4
2227 Male, age 72, unknown 41.7
2823 Male, age 76, right hemisphere 40.2
2769 Male, age 72, unknown 39.2
2725 Female, age 75, unknown 37.9
1954 Female, age 42, unknown 34.2
1821 Female, age 72, unknown 29.9
2584 Male, age 75, left hemisphere 28.3
2588 Male, age 74, left hemisphere 20.4
Substantia nigra
nTPM: 59.7
2699 Male, age 18, unknown 108.1
2590 Female, age 75, unknown 102.0
2665 Male, age 74, both hemispheres 80.0
1916 Female, age 42, unknown 57.6
2583 Male, age 75, right hemisphere 53.4
1941 Male, age 53, unknown 45.4
1851 Male, age 51, unknown 43.7
2241 Male, age 72, unknown 42.8
2409 Female, age 72, unknown 34.9
1889 Female, age 72, unknown 29.3
Superior colliculus
nTPM: 47.0
1913 Female, age 42, unknown 72.4
1995 Male, age 72, unknown 65.3
2587 Male, age 74, left hemisphere 54.6
2664 Male, age 75, both hemispheres 52.1
1839 Male, age 51, unknown 50.6
2087 Female, age 72, unknown 42.8
1796 Male, age 53, unknown 42.4
2261 Male, age 18, unknown 37.0
2668 Female, age 75, unknown 26.8
1895 Male, age 76, right hemisphere 25.7
Ventral tegmental area
nTPM: 56.0
2021 Male, age 53, unknown 76.5
2218 Male, age 76, both hemispheres 59.0
1915 Female, age 42, unknown 54.6
1942 Male, age 51, unknown 53.7
2410 Female, age 72, unknown 51.4
2223 Female, age 72, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 135.4
Min nTPM: 0.4
Std nTPM: 17.8
Median nTPM: 11.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 135.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 86.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 75.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 63.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 53.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 51.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 45.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 44.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 43.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 43.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 184.6
FF:10158-103A5 76 years, female 184.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 99.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.6
Samples: 4

Max nTPM: 111.8
Min nTPM: 82.2
Sample A Female 82.2
Sample B Female 106.2
Sample C Male 111.8
Sample D Male 98.2
Midbrain
nTPM: 70.4
Samples: 4

Max nTPM: 98.1
Min nTPM: 40.3
Sample A Female 94.9
Sample B Female 98.1
Sample C Male 48.3
Sample D Male 40.3
Periaqueductal gray
nTPM: 96.0
Samples: 3

Max nTPM: 124.0
Min nTPM: 69.2
Sample B Female 94.9
Sample C Male 124.0
Sample D Male 69.2
Superior colliculi
nTPM: 55.1
Samples: 4

Max nTPM: 61.0
Min nTPM: 43.7
Sample A Female 61.0
Sample B Female 43.7
Sample C Male 57.1
Sample D Male 58.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 38.5
Min nTPM: 34.4
Sample A Male 38.2
Sample B Male 34.4
Sample C Female 38.5
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
69608106 Antisense, RP_050426_03_E08, Mouse strain C57BL/6J (56 days, male) 3.9

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