MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.4 nTPM
HPA Brain:115.1 nTPM
GTEx:77.4 nTPM
FANTOM5:52.2 Scaled Tags Per Million
Pig:158.1 nTPM
Mouse:91.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.5
2586 Male, age 75, left hemisphere 115.6
2219 Male, age 76, both hemispheres 112.4
2828 Female, age 72, unknown 110.0
1870 Female, age 42, unknown 107.4
1827 Male, age 72, unknown 107.0
1833 Male, age 53, unknown 105.9
2666 Male, age 74, left hemisphere 104.7
2019 Male, age 18, unknown 102.8
1830 Male, age 51, unknown 102.5
2411 Female, age 72, unknown 86.4
Dorsal raphe nucleus
nTPM: 101.9
2298 Female, age 72, unknown 105.1
2047 Male, age 72, unknown 104.4
1828 Male, age 53, unknown 103.7
2016 Female, age 72, unknown 98.2
2750 Male, age 76, both hemispheres 98.2
Inferior colliculus
nTPM: 105.8
2849 Male, age 72, unknown 119.5
1848 Female, age 42, unknown 107.1
1890 Male, age 53, unknown 103.7
2097 Female, age 72, unknown 92.9
Median raphe nucleus
nTPM: 104.9
2220 Male, age 76, midline 104.9
Periaquaductal grey, anterior
nTPM: 114.5
2502 Female, age 75, unknown 122.0
1947 Male, age 18, unknown 114.3
1795 Male, age 51, unknown 107.2
Periaquaductal grey, dorsal
nTPM: 105.8
2850 Male, age 76, both hemispheres 127.4
1831 Male, age 72, unknown 103.7
1840 Male, age 53, unknown 103.3
2464 Female, age 72, unknown 88.9
Periaquaductal grey, lateral
nTPM: 115.1
2272 Male, age 74, both hemispheres 133.2
2140 Male, age 76, both hemispheres 113.4
2053 Male, age 18, unknown 98.6
Pretectal area
nTPM: 112.3
1817 Female, age 42, unknown 122.7
2407 Male, age 75, both hemispheres 121.8
2667 Female, age 75, unknown 118.9
1815 Male, age 53, unknown 117.2
1816 Male, age 51, unknown 115.1
2273 Male, age 74, both hemispheres 114.3
1944 Female, age 72, unknown 112.7
2007 Male, age 72, unknown 111.3
2224 Female, age 72, unknown 107.2
2825 Male, age 18, unknown 105.2
2316 Male, age 76, right hemisphere 88.5
Red nucleus
nTPM: 107.9
1865 Male, age 51, unknown 115.5
2584 Male, age 75, left hemisphere 114.1
2725 Female, age 75, unknown 112.2
2227 Male, age 72, unknown 111.9
2503 Female, age 72, unknown 111.2
1904 Male, age 53, unknown 109.0
2769 Male, age 72, unknown 107.5
1821 Female, age 72, unknown 106.3
2588 Male, age 74, left hemisphere 103.6
1954 Female, age 42, unknown 101.9
2785 Male, age 18, unknown 101.5
2823 Male, age 76, right hemisphere 99.6
Substantia nigra
nTPM: 107.9
2699 Male, age 18, unknown 129.2
1916 Female, age 42, unknown 121.7
1851 Male, age 51, unknown 116.0
2665 Male, age 74, both hemispheres 113.5
1889 Female, age 72, unknown 107.7
2583 Male, age 75, right hemisphere 107.3
2409 Female, age 72, unknown 103.0
1941 Male, age 53, unknown 99.8
2590 Female, age 75, unknown 97.4
2241 Male, age 72, unknown 83.7
Superior colliculus
nTPM: 108.4
2664 Male, age 75, both hemispheres 121.0
2261 Male, age 18, unknown 120.0
1995 Male, age 72, unknown 115.1
1796 Male, age 53, unknown 111.7
1913 Female, age 42, unknown 108.8
1839 Male, age 51, unknown 107.2
2587 Male, age 74, left hemisphere 106.4
2668 Female, age 75, unknown 100.7
2087 Female, age 72, unknown 99.7
1895 Male, age 76, right hemisphere 93.8
Ventral tegmental area
nTPM: 105.1
2223 Female, age 72, unknown 118.1
2218 Male, age 76, both hemispheres 112.5
2410 Female, age 72, unknown 106.5
2021 Male, age 53, unknown 103.6
1942 Male, age 51, unknown 96.9
1915 Female, age 42, unknown 93.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.4
Samples: 139

Max nTPM: 121.1
Min nTPM: 47.7
Std nTPM: 14.2
Median nTPM: 75.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 121.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 116.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 115.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 108.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 107.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 106.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 105.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 100.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.2
FF:10158-103A5 76 years, female 52.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 158.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.9
Samples: 4

Max nTPM: 173.0
Min nTPM: 126.7
Sample A Female 126.7
Sample B Female 144.9
Sample C Male 167.0
Sample D Male 173.0
Midbrain
nTPM: 156.4
Samples: 4

Max nTPM: 185.7
Min nTPM: 143.7
Sample A Female 185.7
Sample B Female 143.7
Sample C Male 144.7
Sample D Male 151.4
Periaqueductal gray
nTPM: 152.9
Samples: 3

Max nTPM: 165.9
Min nTPM: 136.9
Sample B Female 136.9
Sample C Male 165.9
Sample D Male 155.9
Superior colliculi
nTPM: 158.1
Samples: 4

Max nTPM: 164.3
Min nTPM: 149.3
Sample A Female 149.3
Sample B Female 161.2
Sample C Male 157.6
Sample D Male 164.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.1
Samples: 4

Max nTPM: 97.3
Min nTPM: 87.5
Sample A Male 97.3
Sample B Male 87.5
Sample C Female 90.9
Sample D Female 88.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
409 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 0.9
408 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 0.4

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