MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:9.0 nTPM
GTEx:5.2 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:23.2 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
1830 Male, age 51, unknown 9.5
1870 Female, age 42, unknown 9.4
2019 Male, age 18, unknown 9.2
2219 Male, age 76, both hemispheres 9.2
2586 Male, age 75, left hemisphere 8.9
2666 Male, age 74, left hemisphere 8.8
1827 Male, age 72, unknown 8.7
2411 Female, age 72, unknown 8.6
1833 Male, age 53, unknown 8.3
2828 Female, age 72, unknown 7.9
Dorsal raphe nucleus
nTPM: 8.7
2750 Male, age 76, both hemispheres 9.8
2298 Female, age 72, unknown 8.8
1828 Male, age 53, unknown 8.6
2047 Male, age 72, unknown 8.5
2016 Female, age 72, unknown 7.9
Inferior colliculus
nTPM: 8.4
1848 Female, age 42, unknown 8.9
2097 Female, age 72, unknown 8.4
1890 Male, age 53, unknown 8.2
2849 Male, age 72, unknown 8.2
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Periaquaductal grey, anterior
nTPM: 8.2
1947 Male, age 18, unknown 9.0
1795 Male, age 51, unknown 8.0
2502 Female, age 75, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 8.9
1840 Male, age 53, unknown 9.4
2464 Female, age 72, unknown 8.9
1831 Male, age 72, unknown 8.7
2850 Male, age 76, both hemispheres 8.5
Periaquaductal grey, lateral
nTPM: 8.3
2053 Male, age 18, unknown 8.3
2140 Male, age 76, both hemispheres 8.3
2272 Male, age 74, both hemispheres 8.3
Pretectal area
nTPM: 9.0
1817 Female, age 42, unknown 10.2
1815 Male, age 53, unknown 10.0
2007 Male, age 72, unknown 9.5
2273 Male, age 74, both hemispheres 9.5
1816 Male, age 51, unknown 9.1
2224 Female, age 72, unknown 8.7
2316 Male, age 76, right hemisphere 8.7
2667 Female, age 75, unknown 8.6
2407 Male, age 75, both hemispheres 8.4
2825 Male, age 18, unknown 8.4
1944 Female, age 72, unknown 8.3
Red nucleus
nTPM: 8.8
1865 Male, age 51, unknown 9.6
2725 Female, age 75, unknown 9.4
2227 Male, age 72, unknown 9.3
1821 Female, age 72, unknown 9.2
1904 Male, age 53, unknown 9.2
2588 Male, age 74, left hemisphere 9.1
2785 Male, age 18, unknown 8.8
2503 Female, age 72, unknown 8.7
2769 Male, age 72, unknown 8.6
2584 Male, age 75, left hemisphere 8.3
2823 Male, age 76, right hemisphere 8.0
1954 Female, age 42, unknown 7.8
Substantia nigra
nTPM: 7.9
2665 Male, age 74, both hemispheres 10.4
1889 Female, age 72, unknown 8.9
1941 Male, age 53, unknown 8.2
2583 Male, age 75, right hemisphere 8.1
2590 Female, age 75, unknown 7.8
2699 Male, age 18, unknown 7.8
2241 Male, age 72, unknown 7.5
1916 Female, age 42, unknown 7.1
1851 Male, age 51, unknown 6.9
2409 Female, age 72, unknown 6.0
Superior colliculus
nTPM: 8.7
1913 Female, age 42, unknown 9.7
2587 Male, age 74, left hemisphere 9.7
2668 Female, age 75, unknown 9.2
1995 Male, age 72, unknown 9.0
1895 Male, age 76, right hemisphere 8.9
2087 Female, age 72, unknown 8.6
1839 Male, age 51, unknown 8.5
2261 Male, age 18, unknown 8.1
1796 Male, age 53, unknown 7.9
2664 Male, age 75, both hemispheres 6.9
Ventral tegmental area
nTPM: 8.4
2223 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 8.4
1942 Male, age 51, unknown 8.3
2410 Female, age 72, unknown 8.3
2218 Male, age 76, both hemispheres 7.9
2021 Male, age 53, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.2
Samples: 139

Max nTPM: 9.9
Min nTPM: 3.4
Std nTPM: 1.0
Median nTPM: 5.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 9.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 9.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 8.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 8.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 7.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 7.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 7.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 6.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 6.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 6.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.7
Sample A Female 16.4
Sample B Female 14.6
Sample C Male 15.8
Sample D Male 13.7
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 15.5
Sample C Male 18.3
Sample D Male 18.2
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 15.3
Min nTPM: 15.0
Sample B Female 15.0
Sample C Male 15.3
Sample D Male 15.1
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 16.0
Sample A Female 17.2
Sample B Female 16.5
Sample C Male 18.6
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 23.8
Min nTPM: 22.5
Sample A Male 22.7
Sample B Male 22.5
Sample C Female 23.6
Sample D Female 23.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
67767469 Antisense, RP_040916_02_B09, Mouse strain C57BL/6J (56 days, male) 8.7

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