MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:151.9 nTPM
HPA Brain:78.1 nTPM
GTEx:151.9 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:18.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.7
2586 Male, age 75, left hemisphere 80.8
2019 Male, age 18, unknown 77.5
2411 Female, age 72, unknown 73.7
1827 Male, age 72, unknown 72.8
1870 Female, age 42, unknown 72.2
2219 Male, age 76, both hemispheres 67.3
1833 Male, age 53, unknown 67.1
2828 Female, age 72, unknown 64.2
2666 Male, age 74, left hemisphere 60.9
1830 Male, age 51, unknown 60.6
Dorsal raphe nucleus
nTPM: 71.6
2298 Female, age 72, unknown 86.7
2047 Male, age 72, unknown 73.6
2750 Male, age 76, both hemispheres 71.3
1828 Male, age 53, unknown 68.9
2016 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 73.4
2097 Female, age 72, unknown 88.9
1890 Male, age 53, unknown 77.2
1848 Female, age 42, unknown 65.0
2849 Male, age 72, unknown 62.6
Median raphe nucleus
nTPM: 67.9
2220 Male, age 76, midline 67.9
Periaquaductal grey, anterior
nTPM: 66.1
2502 Female, age 75, unknown 72.3
1795 Male, age 51, unknown 65.6
1947 Male, age 18, unknown 60.6
Periaquaductal grey, dorsal
nTPM: 63.4
1840 Male, age 53, unknown 70.1
1831 Male, age 72, unknown 66.0
2850 Male, age 76, both hemispheres 63.9
2464 Female, age 72, unknown 53.6
Periaquaductal grey, lateral
nTPM: 62.4
2053 Male, age 18, unknown 65.8
2272 Male, age 74, both hemispheres 63.9
2140 Male, age 76, both hemispheres 57.4
Pretectal area
nTPM: 71.8
2007 Male, age 72, unknown 89.4
1817 Female, age 42, unknown 86.7
1816 Male, age 51, unknown 82.5
1944 Female, age 72, unknown 80.0
2273 Male, age 74, both hemispheres 72.1
1815 Male, age 53, unknown 70.3
2224 Female, age 72, unknown 69.2
2667 Female, age 75, unknown 68.0
2316 Male, age 76, right hemisphere 62.6
2825 Male, age 18, unknown 58.8
2407 Male, age 75, both hemispheres 50.7
Red nucleus
nTPM: 78.1
1821 Female, age 72, unknown 92.8
2588 Male, age 74, left hemisphere 83.6
2725 Female, age 75, unknown 83.6
2785 Male, age 18, unknown 83.4
2227 Male, age 72, unknown 79.8
1865 Male, age 51, unknown 79.7
2503 Female, age 72, unknown 79.2
2769 Male, age 72, unknown 77.9
1954 Female, age 42, unknown 76.9
1904 Male, age 53, unknown 76.4
2823 Male, age 76, right hemisphere 64.9
2584 Male, age 75, left hemisphere 58.9
Substantia nigra
nTPM: 78.0
1916 Female, age 42, unknown 103.4
1851 Male, age 51, unknown 89.9
1889 Female, age 72, unknown 85.4
2409 Female, age 72, unknown 80.8
2699 Male, age 18, unknown 79.3
1941 Male, age 53, unknown 71.0
2665 Male, age 74, both hemispheres 70.6
2241 Male, age 72, unknown 69.0
2590 Female, age 75, unknown 67.5
2583 Male, age 75, right hemisphere 63.3
Superior colliculus
nTPM: 65.9
1796 Male, age 53, unknown 74.3
2587 Male, age 74, left hemisphere 70.6
2087 Female, age 72, unknown 68.7
1913 Female, age 42, unknown 67.2
2668 Female, age 75, unknown 66.4
2261 Male, age 18, unknown 66.1
1895 Male, age 76, right hemisphere 64.9
2664 Male, age 75, both hemispheres 62.8
1839 Male, age 51, unknown 60.0
1995 Male, age 72, unknown 57.7
Ventral tegmental area
nTPM: 77.5
2410 Female, age 72, unknown 87.0
2223 Female, age 72, unknown 85.3
1915 Female, age 42, unknown 80.9
2218 Male, age 76, both hemispheres 72.9
1942 Male, age 51, unknown 70.0
2021 Male, age 53, unknown 68.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.9
Samples: 139

Max nTPM: 414.1
Min nTPM: 58.1
Std nTPM: 46.9
Median nTPM: 145.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 414.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 382.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 258.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 250.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 239.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 226.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 224.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 217.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 216.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 215.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 215.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 26.3
Min nTPM: 10.5
Sample A Female 26.3
Sample B Female 15.8
Sample C Male 18.5
Sample D Male 10.5
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 21.9
Min nTPM: 18.5
Sample A Female 21.9
Sample B Female 18.5
Sample C Male 20.6
Sample D Male 20.4
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 18.5
Min nTPM: 15.3
Sample B Female 15.4
Sample C Male 18.5
Sample D Male 15.3
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 29.5
Min nTPM: 18.8
Sample A Female 29.5
Sample B Female 21.0
Sample C Male 21.7
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.1
Sample A Male 23.4
Sample B Male 16.6
Sample C Female 15.1
Sample D Female 20.3

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