MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA Brain:65.8 nTPM
GTEx:32.4 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:66.4 nTPM
Mouse:76.6 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.6
2019 Male, age 18, unknown 63.5
2586 Male, age 75, left hemisphere 55.6
2666 Male, age 74, left hemisphere 54.4
2411 Female, age 72, unknown 47.0
1827 Male, age 72, unknown 46.6
2828 Female, age 72, unknown 45.6
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 38.6
1870 Female, age 42, unknown 38.2
2219 Male, age 76, both hemispheres 36.3
Dorsal raphe nucleus
nTPM: 49.8
1828 Male, age 53, unknown 60.1
2298 Female, age 72, unknown 56.4
2047 Male, age 72, unknown 51.5
2016 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 39.3
Inferior colliculus
nTPM: 47.8
1890 Male, age 53, unknown 56.4
2097 Female, age 72, unknown 56.0
1848 Female, age 42, unknown 43.7
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 65.8
1947 Male, age 18, unknown 71.6
1795 Male, age 51, unknown 63.6
2502 Female, age 75, unknown 62.3
Periaquaductal grey, dorsal
nTPM: 39.2
1840 Male, age 53, unknown 41.0
2850 Male, age 76, both hemispheres 39.6
2464 Female, age 72, unknown 38.6
1831 Male, age 72, unknown 37.5
Periaquaductal grey, lateral
nTPM: 44.4
2272 Male, age 74, both hemispheres 54.3
2140 Male, age 76, both hemispheres 42.4
2053 Male, age 18, unknown 36.6
Pretectal area
nTPM: 54.3
2007 Male, age 72, unknown 81.5
1816 Male, age 51, unknown 67.6
1944 Female, age 72, unknown 67.1
1817 Female, age 42, unknown 63.3
2667 Female, age 75, unknown 49.3
1815 Male, age 53, unknown 49.1
2316 Male, age 76, right hemisphere 48.0
2273 Male, age 74, both hemispheres 47.7
2825 Male, age 18, unknown 42.5
2407 Male, age 75, both hemispheres 40.8
2224 Female, age 72, unknown 40.1
Red nucleus
nTPM: 51.4
2785 Male, age 18, unknown 64.7
2769 Male, age 72, unknown 55.1
2227 Male, age 72, unknown 55.0
2503 Female, age 72, unknown 53.6
1954 Female, age 42, unknown 53.0
2725 Female, age 75, unknown 52.7
1821 Female, age 72, unknown 51.6
2584 Male, age 75, left hemisphere 51.4
2588 Male, age 74, left hemisphere 48.8
1904 Male, age 53, unknown 46.6
1865 Male, age 51, unknown 44.1
2823 Male, age 76, right hemisphere 40.0
Substantia nigra
nTPM: 54.9
2665 Male, age 74, both hemispheres 69.6
1916 Female, age 42, unknown 66.2
1889 Female, age 72, unknown 62.8
1941 Male, age 53, unknown 60.3
1851 Male, age 51, unknown 60.0
2583 Male, age 75, right hemisphere 50.6
2590 Female, age 75, unknown 50.1
2409 Female, age 72, unknown 48.1
2241 Male, age 72, unknown 47.4
2699 Male, age 18, unknown 33.3
Superior colliculus
nTPM: 46.4
2261 Male, age 18, unknown 57.1
2087 Female, age 72, unknown 56.2
2664 Male, age 75, both hemispheres 54.9
2668 Female, age 75, unknown 53.8
1796 Male, age 53, unknown 44.9
1895 Male, age 76, right hemisphere 44.0
1839 Male, age 51, unknown 43.1
2587 Male, age 74, left hemisphere 39.5
1995 Male, age 72, unknown 37.5
1913 Female, age 42, unknown 32.8
Ventral tegmental area
nTPM: 45.8
2410 Female, age 72, unknown 62.6
1915 Female, age 42, unknown 51.4
1942 Male, age 51, unknown 47.0
2218 Male, age 76, both hemispheres 46.7
2021 Male, age 53, unknown 35.6
2223 Female, age 72, unknown 31.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 139

Max nTPM: 88.2
Min nTPM: 10.3
Std nTPM: 13.1
Median nTPM: 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 66.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 63.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 61.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 56.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 55.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 52.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.4
Samples: 4

Max nTPM: 49.4
Min nTPM: 17.6
Sample A Female 49.4
Sample B Female 40.1
Sample C Male 38.5
Sample D Male 17.6
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 57.5
Min nTPM: 28.0
Sample A Female 36.7
Sample B Female 28.0
Sample C Male 57.5
Sample D Male 30.4
Periaqueductal gray
nTPM: 36.0
Samples: 3

Max nTPM: 43.5
Min nTPM: 27.8
Sample B Female 36.7
Sample C Male 43.5
Sample D Male 27.8
Superior colliculi
nTPM: 66.4
Samples: 4

Max nTPM: 92.9
Min nTPM: 37.6
Sample A Female 54.4
Sample B Female 92.9
Sample C Male 80.6
Sample D Male 37.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.6
Samples: 4

Max nTPM: 78.0
Min nTPM: 76.0
Sample A Male 76.0
Sample B Male 76.0
Sample C Female 78.0
Sample D Female 76.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
72008122 Antisense, RP_051017_01_B11, Mouse strain C57BL/6J (56 days, male) 9.2
68443142 Antisense, RP_050111_01_D09, Mouse strain C57BL/6J (56 days, male) 8.5

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