MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.8 nTPM
HPA Brain:12.1 nTPM
GTEx:0.8 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
1830 Male, age 51, unknown 11.2
1827 Male, age 72, unknown 11.1
2411 Female, age 72, unknown 11.1
1833 Male, age 53, unknown 11.0
1870 Female, age 42, unknown 10.3
2828 Female, age 72, unknown 10.2
2019 Male, age 18, unknown 9.8
2219 Male, age 76, both hemispheres 8.7
2586 Male, age 75, left hemisphere 8.4
2666 Male, age 74, left hemisphere 7.9
Dorsal raphe nucleus
nTPM: 9.8
2750 Male, age 76, both hemispheres 11.2
2047 Male, age 72, unknown 10.1
1828 Male, age 53, unknown 9.6
2016 Female, age 72, unknown 9.5
2298 Female, age 72, unknown 8.4
Inferior colliculus
nTPM: 10.1
1848 Female, age 42, unknown 11.5
2849 Male, age 72, unknown 9.7
2097 Female, age 72, unknown 9.6
1890 Male, age 53, unknown 9.3
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Periaquaductal grey, anterior
nTPM: 9.3
1947 Male, age 18, unknown 10.5
1795 Male, age 51, unknown 8.9
2502 Female, age 75, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 9.9
1840 Male, age 53, unknown 10.2
2464 Female, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 9.8
1831 Male, age 72, unknown 9.7
Periaquaductal grey, lateral
nTPM: 9.4
2140 Male, age 76, both hemispheres 10.0
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 9.1
Pretectal area
nTPM: 9.2
2825 Male, age 18, unknown 11.3
2316 Male, age 76, right hemisphere 10.2
2224 Female, age 72, unknown 10.1
1944 Female, age 72, unknown 9.5
1815 Male, age 53, unknown 9.3
2667 Female, age 75, unknown 9.1
2407 Male, age 75, both hemispheres 8.7
2273 Male, age 74, both hemispheres 8.6
1816 Male, age 51, unknown 8.3
2007 Male, age 72, unknown 8.3
1817 Female, age 42, unknown 7.3
Red nucleus
nTPM: 9.6
2823 Male, age 76, right hemisphere 11.5
2588 Male, age 74, left hemisphere 10.4
1954 Female, age 42, unknown 10.3
2725 Female, age 75, unknown 9.9
2503 Female, age 72, unknown 9.8
1821 Female, age 72, unknown 9.7
2584 Male, age 75, left hemisphere 9.6
1865 Male, age 51, unknown 9.5
1904 Male, age 53, unknown 9.3
2227 Male, age 72, unknown 9.1
2769 Male, age 72, unknown 8.1
2785 Male, age 18, unknown 8.0
Substantia nigra
nTPM: 9.6
2241 Male, age 72, unknown 12.7
2590 Female, age 75, unknown 11.4
2583 Male, age 75, right hemisphere 10.2
1851 Male, age 51, unknown 9.4
2409 Female, age 72, unknown 9.3
1889 Female, age 72, unknown 9.0
2699 Male, age 18, unknown 9.0
1916 Female, age 42, unknown 8.6
1941 Male, age 53, unknown 8.6
2665 Male, age 74, both hemispheres 7.9
Superior colliculus
nTPM: 9.5
1895 Male, age 76, right hemisphere 12.1
1913 Female, age 42, unknown 9.9
2087 Female, age 72, unknown 9.9
1839 Male, age 51, unknown 9.8
1796 Male, age 53, unknown 9.7
2587 Male, age 74, left hemisphere 9.5
2261 Male, age 18, unknown 8.8
1995 Male, age 72, unknown 8.6
2668 Female, age 75, unknown 8.4
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 10.0
2410 Female, age 72, unknown 10.8
2021 Male, age 53, unknown 10.2
2218 Male, age 76, both hemispheres 10.2
1942 Male, age 51, unknown 9.8
1915 Female, age 42, unknown 9.7
2223 Female, age 72, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.8
Samples: 139

Max nTPM: 2.8
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68910988 Antisense, RP_050203_01_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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