MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:36.5 nTPM
GTEx:11.6 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:7.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
2019 Male, age 18, unknown 39.1
1827 Male, age 72, unknown 37.9
2219 Male, age 76, both hemispheres 31.0
2586 Male, age 75, left hemisphere 21.8
2828 Female, age 72, unknown 21.2
2666 Male, age 74, left hemisphere 20.3
2411 Female, age 72, unknown 16.6
1830 Male, age 51, unknown 13.7
1833 Male, age 53, unknown 13.6
1870 Female, age 42, unknown 10.8
Dorsal raphe nucleus
nTPM: 12.6
2298 Female, age 72, unknown 16.2
2750 Male, age 76, both hemispheres 13.3
1828 Male, age 53, unknown 12.5
2016 Female, age 72, unknown 11.1
2047 Male, age 72, unknown 9.8
Inferior colliculus
nTPM: 17.0
1890 Male, age 53, unknown 21.2
2097 Female, age 72, unknown 20.6
2849 Male, age 72, unknown 13.4
1848 Female, age 42, unknown 12.6
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Periaquaductal grey, anterior
nTPM: 17.9
1795 Male, age 51, unknown 25.7
2502 Female, age 75, unknown 16.5
1947 Male, age 18, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 18.7
1831 Male, age 72, unknown 31.4
2464 Female, age 72, unknown 17.3
1840 Male, age 53, unknown 13.1
2850 Male, age 76, both hemispheres 13.1
Periaquaductal grey, lateral
nTPM: 16.7
2053 Male, age 18, unknown 18.4
2272 Male, age 74, both hemispheres 18.1
2140 Male, age 76, both hemispheres 13.6
Pretectal area
nTPM: 36.5
1816 Male, age 51, unknown 77.7
1944 Female, age 72, unknown 58.2
2007 Male, age 72, unknown 57.8
1815 Male, age 53, unknown 50.0
1817 Female, age 42, unknown 44.6
2667 Female, age 75, unknown 26.6
2407 Male, age 75, both hemispheres 23.6
2224 Female, age 72, unknown 17.9
2273 Male, age 74, both hemispheres 17.9
2316 Male, age 76, right hemisphere 14.6
2825 Male, age 18, unknown 12.6
Red nucleus
nTPM: 18.5
2785 Male, age 18, unknown 33.9
2584 Male, age 75, left hemisphere 24.7
2588 Male, age 74, left hemisphere 20.9
2725 Female, age 75, unknown 18.9
2503 Female, age 72, unknown 17.9
1954 Female, age 42, unknown 17.3
1821 Female, age 72, unknown 17.2
2823 Male, age 76, right hemisphere 16.5
1904 Male, age 53, unknown 16.1
1865 Male, age 51, unknown 15.7
2227 Male, age 72, unknown 11.3
2769 Male, age 72, unknown 11.1
Substantia nigra
nTPM: 22.6
1889 Female, age 72, unknown 35.4
1916 Female, age 42, unknown 30.2
2665 Male, age 74, both hemispheres 24.8
2409 Female, age 72, unknown 24.7
2583 Male, age 75, right hemisphere 22.6
2590 Female, age 75, unknown 22.1
1851 Male, age 51, unknown 21.4
1941 Male, age 53, unknown 16.4
2241 Male, age 72, unknown 15.3
2699 Male, age 18, unknown 12.7
Superior colliculus
nTPM: 26.4
2087 Female, age 72, unknown 45.1
1796 Male, age 53, unknown 37.6
2261 Male, age 18, unknown 36.6
1913 Female, age 42, unknown 27.2
2668 Female, age 75, unknown 26.8
2664 Male, age 75, both hemispheres 23.6
1995 Male, age 72, unknown 20.7
2587 Male, age 74, left hemisphere 17.6
1895 Male, age 76, right hemisphere 17.0
1839 Male, age 51, unknown 11.4
Ventral tegmental area
nTPM: 15.8
2410 Female, age 72, unknown 20.6
2218 Male, age 76, both hemispheres 17.4
1915 Female, age 42, unknown 16.1
1942 Male, age 51, unknown 14.5
2021 Male, age 53, unknown 13.9
2223 Female, age 72, unknown 12.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 50.3
Min nTPM: 2.0
Std nTPM: 9.6
Median nTPM: 7.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 35.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 31.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 30.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 29.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 29.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 28.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.5
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.4
Sample A Female 4.0
Sample B Female 3.1
Sample C Male 2.4
Sample D Male 4.3
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 65.4
Min nTPM: 3.7
Sample A Female 7.3
Sample B Female 3.7
Sample C Male 65.4
Sample D Male 15.8
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 4.7
Min nTPM: 3.6
Sample B Female 3.6
Sample C Male 4.7
Sample D Male 4.2
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 43.2
Min nTPM: 13.6
Sample A Female 13.9
Sample B Female 13.6
Sample C Male 43.2
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.6
Sample A Male 6.6
Sample B Male 7.3
Sample C Female 7.8
Sample D Female 8.1

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