HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:22.2 nTPM
GTEx:13.7 nTPM
FANTOM5:4.1 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:31.1 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Hippocampus
nTPM: 20.9
1855 Male, age 76, left hemisphere 22.5
2148 Female, age 91, left hemisphere 21.5
2529 Female, age 94, left hemisphere 20.8
1898 Male, age 80, left hemisphere 20.3
1911 Female, age 85, right hemisphere 20.2
2621 Female, age 67, right hemisphere 20.2
Dentate gyrus
nTPM: 21.2
2530 Female, age 94, left hemisphere 22.9
2246 Female, age 85, both hemispheres 22.5
2531 Female, age 67, both hemispheres 21.8
1927 Female, age 91, both hemispheres 20.4
2010 Male, age 76, both hemispheres 20.4
2528 Male, age 74, both hemispheres 19.4
Entorhinal gyrus
nTPM: 20.9
2613 Female, age 94, left hemisphere 22.5
1787 Male, age 76, left hemisphere 22.1
2764 Male, age 80, right hemisphere 21.3
2686 Male, age 75, right hemisphere 20.3
2117 Female, age 91, right hemisphere 20.1
1938 Female, age 85, left hemisphere 19.2
Hippocampus, CA1
nTPM: 22.0
2749 Male, age 80, left hemisphere 29.3
2527 Male, age 74, both hemispheres 22.4
1873 Female, age 85, both hemispheres 21.0
2045 Male, age 76, both hemispheres 19.8
2082 Female, age 91, right hemisphere 17.5
Hippocampus, CA2
nTPM: 21.3
1963 Male, age 80, left hemisphere 26.8
1940 Female, age 85, left hemisphere 22.6
2437 Female, age 94, left hemisphere 22.1
2113 Female, age 91, right hemisphere 20.2
2249 Male, age 74, both hemispheres 18.5
1892 Male, age 76, both hemispheres 17.5
Hippocampus, CA3
nTPM: 21.4
2861 Female, age 67, both hemispheres 28.7
2137 Male, age 80, left hemisphere 26.5
2620 Female, age 94, left hemisphere 20.4
1891 Female, age 85, both hemispheres 18.6
1867 Male, age 76, both hemispheres 18.4
2436 Male, age 74, both hemispheres 15.6
Parahippocampal cortex
nTPM: 22.2
2245 Female, age 91, both hemispheres 25.8
2692 Male, age 74, both hemispheres 25.2
2622 Female, age 67, right hemisphere 24.7
1933 Female, age 85, both hemispheres 23.6
1990 Female, age 91, right hemisphere 21.2
2532 Female, age 72, left hemisphere 21.2
2693 Female, age 94, both hemispheres 21.2
1850 Male, age 80, both hemispheres 20.2
2018 Male, age 76, both hemispheres 19.6
2250 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 20.1
2521 Female, age 94, right hemisphere 23.1
1794 Male, age 80, right hemisphere 20.3
1847 Female, age 91, left hemisphere 19.6
1841 Female, age 85, right hemisphere 19.1
2848 Male, age 76, right hemisphere 18.5
Subiculum
nTPM: 21.9
2438 Female, age 94, left hemisphere 26.5
2042 Male, age 76, both hemispheres 23.1
2619 Male, age 74, both hemispheres 23.1
1901 Male, age 80, both hemispheres 21.9
1977 Female, age 85, both hemispheres 18.4
2729 Female, age 91, right hemisphere 18.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.7
Samples: 197

Max nTPM: 21.5
Min nTPM: 7.1
Std nTPM: 2.6
Median nTPM: 13.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 21.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 20.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 20.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 20.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 19.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 19.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 19.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 18.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 18.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 18.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 18.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4.1
FF:10169-103B7 60 years, female 4.1
FF:10153-102I9 76 years, female 4.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Subiculum
nTPM: 18.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 19.4
Sample C Male 18.0
Sample D Male 19.5
Dorsal hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 20.1
Sample A Female 26.3
Sample B Female 24.0
Sample C Male 28.4
Sample D Male 20.1
Entorhinal cortex
nTPM: 17.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 16.3
Sample A Female 17.2
Sample B Female 18.0
Sample C Male 18.0
Sample D Male 16.3
Ventral hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 25.0
Min nTPM: 19.1
Sample A Female 19.7
Sample B Female 19.1
Sample C Male 24.5
Sample D Male 25.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 21.6
Sample A Male 24.7
Sample B Male 28.7
Sample C Female 27.8
Sample D Female 21.6
Hippocampal formation
nTPM: 31.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 30.1
Sample C Female 34.7
Sample D Female 31.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
73584831 Antisense, RP_051206_01_C04, Mouse strain C57BL/6J (56 days, male) 3.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org