MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:21.0 nTPM
GTEx:10.4 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:2.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.2
2019 Male, age 18, unknown 23.8
2586 Male, age 75, left hemisphere 22.6
1830 Male, age 51, unknown 19.2
2666 Male, age 74, left hemisphere 18.4
2828 Female, age 72, unknown 18.2
1833 Male, age 53, unknown 16.9
1870 Female, age 42, unknown 15.7
2411 Female, age 72, unknown 13.3
1827 Male, age 72, unknown 13.0
2219 Male, age 76, both hemispheres 10.6
Dorsal raphe nucleus
nTPM: 15.0
2750 Male, age 76, both hemispheres 16.8
1828 Male, age 53, unknown 15.8
2016 Female, age 72, unknown 15.5
2298 Female, age 72, unknown 13.8
2047 Male, age 72, unknown 12.9
Inferior colliculus
nTPM: 13.0
1848 Female, age 42, unknown 15.4
1890 Male, age 53, unknown 14.1
2849 Male, age 72, unknown 11.4
2097 Female, age 72, unknown 11.3
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Periaquaductal grey, anterior
nTPM: 13.2
2502 Female, age 75, unknown 14.1
1795 Male, age 51, unknown 13.5
1947 Male, age 18, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 12.1
2464 Female, age 72, unknown 13.6
1831 Male, age 72, unknown 13.2
2850 Male, age 76, both hemispheres 12.8
1840 Male, age 53, unknown 9.0
Periaquaductal grey, lateral
nTPM: 14.3
2140 Male, age 76, both hemispheres 19.0
2053 Male, age 18, unknown 13.1
2272 Male, age 74, both hemispheres 10.9
Pretectal area
nTPM: 14.2
2667 Female, age 75, unknown 19.0
2007 Male, age 72, unknown 16.3
2316 Male, age 76, right hemisphere 16.3
1815 Male, age 53, unknown 15.2
1817 Female, age 42, unknown 14.9
2407 Male, age 75, both hemispheres 14.9
2825 Male, age 18, unknown 13.8
2224 Female, age 72, unknown 12.3
1944 Female, age 72, unknown 11.9
2273 Male, age 74, both hemispheres 11.2
1816 Male, age 51, unknown 10.3
Red nucleus
nTPM: 21.0
2588 Male, age 74, left hemisphere 28.5
1954 Female, age 42, unknown 24.7
1904 Male, age 53, unknown 23.4
1865 Male, age 51, unknown 22.9
2227 Male, age 72, unknown 22.1
1821 Female, age 72, unknown 21.9
2503 Female, age 72, unknown 20.8
2769 Male, age 72, unknown 20.6
2785 Male, age 18, unknown 19.0
2584 Male, age 75, left hemisphere 16.5
2725 Female, age 75, unknown 16.3
2823 Male, age 76, right hemisphere 15.7
Substantia nigra
nTPM: 14.6
2665 Male, age 74, both hemispheres 18.0
2583 Male, age 75, right hemisphere 16.1
1851 Male, age 51, unknown 15.8
2241 Male, age 72, unknown 15.8
2409 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 14.4
1889 Female, age 72, unknown 14.0
1941 Male, age 53, unknown 13.1
1916 Female, age 42, unknown 12.4
2590 Female, age 75, unknown 12.2
Superior colliculus
nTPM: 14.4
1995 Male, age 72, unknown 16.4
2587 Male, age 74, left hemisphere 15.1
2668 Female, age 75, unknown 14.9
1796 Male, age 53, unknown 14.8
1839 Male, age 51, unknown 14.8
2664 Male, age 75, both hemispheres 14.7
1913 Female, age 42, unknown 14.6
2087 Female, age 72, unknown 13.9
2261 Male, age 18, unknown 13.2
1895 Male, age 76, right hemisphere 11.9
Ventral tegmental area
nTPM: 13.3
2223 Female, age 72, unknown 14.8
1915 Female, age 42, unknown 13.5
2410 Female, age 72, unknown 13.5
2021 Male, age 53, unknown 13.2
1942 Male, age 51, unknown 12.3
2218 Male, age 76, both hemispheres 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 46.9
Min nTPM: 2.9
Std nTPM: 5.7
Median nTPM: 9.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 46.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 25.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 24.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 24.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 23.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 22.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 47.2
Min nTPM: 12.0
Sample A Female 13.2
Sample B Female 47.2
Sample C Male 12.0
Sample D Male 14.1
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.6
Sample A Female 9.5
Sample B Female 10.7
Sample C Male 10.8
Sample D Male 8.6
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 7.7
Min nTPM: 5.4
Sample B Female 7.7
Sample C Male 6.2
Sample D Male 5.4
Superior colliculi
nTPM: 12.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.5
Sample A Female 12.9
Sample B Female 13.5
Sample C Male 11.5
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.0
Sample A Male 2.8
Sample B Male 2.0
Sample C Female 2.5
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
74819233 Antisense, RP_060315_02_B09, Mouse strain C57BL/6J (56 days, male) 1.8
68300821 Antisense, RP_041129_02_C02, Mouse strain C57BL/6J (56 days, male) 0.2

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