MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.4 nTPM
HPA Brain:56.1 nTPM
GTEx:124.4 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:95.4 nTPM
Mouse:130.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
2411 Female, age 72, unknown 45.8
1827 Male, age 72, unknown 44.5
2219 Male, age 76, both hemispheres 44.3
2586 Male, age 75, left hemisphere 43.9
1870 Female, age 42, unknown 43.7
2666 Male, age 74, left hemisphere 43.2
2828 Female, age 72, unknown 40.1
2019 Male, age 18, unknown 40.0
1830 Male, age 51, unknown 39.3
1833 Male, age 53, unknown 38.5
Dorsal raphe nucleus
nTPM: 45.5
2298 Female, age 72, unknown 53.6
2750 Male, age 76, both hemispheres 46.9
1828 Male, age 53, unknown 44.8
2047 Male, age 72, unknown 42.4
2016 Female, age 72, unknown 39.7
Inferior colliculus
nTPM: 45.5
2097 Female, age 72, unknown 52.4
1848 Female, age 42, unknown 44.3
1890 Male, age 53, unknown 43.1
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 45.2
1947 Male, age 18, unknown 46.2
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 40.5
1840 Male, age 53, unknown 47.4
2464 Female, age 72, unknown 41.1
2850 Male, age 76, both hemispheres 39.4
1831 Male, age 72, unknown 34.1
Periaquaductal grey, lateral
nTPM: 40.2
2053 Male, age 18, unknown 40.5
2140 Male, age 76, both hemispheres 40.5
2272 Male, age 74, both hemispheres 39.6
Pretectal area
nTPM: 44.5
1817 Female, age 42, unknown 51.5
2007 Male, age 72, unknown 50.8
1816 Male, age 51, unknown 49.7
2667 Female, age 75, unknown 48.8
2224 Female, age 72, unknown 46.8
2825 Male, age 18, unknown 44.4
1944 Female, age 72, unknown 43.4
1815 Male, age 53, unknown 42.8
2273 Male, age 74, both hemispheres 41.1
2316 Male, age 76, right hemisphere 38.9
2407 Male, age 75, both hemispheres 31.5
Red nucleus
nTPM: 45.6
1821 Female, age 72, unknown 64.8
1865 Male, age 51, unknown 48.3
2227 Male, age 72, unknown 47.3
2725 Female, age 75, unknown 47.0
1904 Male, age 53, unknown 46.8
1954 Female, age 42, unknown 46.6
2503 Female, age 72, unknown 46.3
2769 Male, age 72, unknown 45.7
2785 Male, age 18, unknown 43.6
2823 Male, age 76, right hemisphere 43.4
2588 Male, age 74, left hemisphere 38.0
2584 Male, age 75, left hemisphere 29.9
Substantia nigra
nTPM: 56.1
1916 Female, age 42, unknown 79.5
2241 Male, age 72, unknown 63.9
1851 Male, age 51, unknown 63.4
1941 Male, age 53, unknown 63.1
2699 Male, age 18, unknown 53.9
1889 Female, age 72, unknown 52.8
2409 Female, age 72, unknown 52.3
2665 Male, age 74, both hemispheres 50.0
2590 Female, age 75, unknown 43.6
2583 Male, age 75, right hemisphere 38.8
Superior colliculus
nTPM: 41.2
1796 Male, age 53, unknown 47.1
2668 Female, age 75, unknown 45.4
2261 Male, age 18, unknown 44.1
1895 Male, age 76, right hemisphere 43.6
2087 Female, age 72, unknown 43.3
2587 Male, age 74, left hemisphere 41.0
1839 Male, age 51, unknown 37.0
1913 Female, age 42, unknown 37.0
1995 Male, age 72, unknown 37.0
2664 Male, age 75, both hemispheres 36.8
Ventral tegmental area
nTPM: 50.2
2410 Female, age 72, unknown 61.6
1915 Female, age 42, unknown 61.4
2218 Male, age 76, both hemispheres 53.2
2223 Female, age 72, unknown 45.6
1942 Male, age 51, unknown 42.8
2021 Male, age 53, unknown 36.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.4
Samples: 139

Max nTPM: 223.9
Min nTPM: 58.6
Std nTPM: 31.7
Median nTPM: 119.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 223.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 222.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 205.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 202.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 194.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 190.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 190.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 186.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 182.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 181.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 180.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.3
Samples: 4

Max nTPM: 138.3
Min nTPM: 56.2
Sample A Female 138.3
Sample B Female 82.1
Sample C Male 88.6
Sample D Male 56.2
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 97.6
Min nTPM: 77.8
Sample A Female 97.6
Sample B Female 93.0
Sample C Male 93.0
Sample D Male 77.8
Periaqueductal gray
nTPM: 69.6
Samples: 3

Max nTPM: 77.4
Min nTPM: 63.3
Sample B Female 68.2
Sample C Male 77.4
Sample D Male 63.3
Superior colliculi
nTPM: 95.4
Samples: 4

Max nTPM: 119.3
Min nTPM: 81.7
Sample A Female 119.3
Sample B Female 83.0
Sample C Male 97.5
Sample D Male 81.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.0
Samples: 4

Max nTPM: 143.3
Min nTPM: 119.2
Sample A Male 143.3
Sample B Male 119.2
Sample C Female 126.5
Sample D Female 131.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
75828180 Antisense, RP_060601_01_F04, Mouse strain C57BL/6J (56 days, male) 2.4

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