MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:694.1 nTPM
HPA Brain:851.9 nTPM
GTEx:694.1 nTPM
FANTOM5:997.4 Scaled Tags Per Million
Pig:1381.0 nTPM
Mouse:1034.0 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 851.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 660.1
2411 Female, age 72, unknown 747.0
2828 Female, age 72, unknown 740.7
2586 Male, age 75, left hemisphere 716.6
1870 Female, age 42, unknown 714.7
1827 Male, age 72, unknown 665.2
1830 Male, age 51, unknown 628.6
1833 Male, age 53, unknown 622.9
2019 Male, age 18, unknown 598.3
2219 Male, age 76, both hemispheres 595.7
2666 Male, age 74, left hemisphere 571.7
Dorsal raphe nucleus
nTPM: 772.8
2298 Female, age 72, unknown 903.4
2047 Male, age 72, unknown 844.9
2750 Male, age 76, both hemispheres 773.6
1828 Male, age 53, unknown 728.5
2016 Female, age 72, unknown 613.7
Inferior colliculus
nTPM: 586.3
2097 Female, age 72, unknown 642.2
1848 Female, age 42, unknown 604.9
1890 Male, age 53, unknown 592.4
2849 Male, age 72, unknown 505.6
Median raphe nucleus
nTPM: 848.0
2220 Male, age 76, midline 848.0
Periaquaductal grey, anterior
nTPM: 763.1
1795 Male, age 51, unknown 795.1
1947 Male, age 18, unknown 773.0
2502 Female, age 75, unknown 721.3
Periaquaductal grey, dorsal
nTPM: 592.5
2850 Male, age 76, both hemispheres 629.2
1840 Male, age 53, unknown 625.0
1831 Male, age 72, unknown 595.5
2464 Female, age 72, unknown 520.1
Periaquaductal grey, lateral
nTPM: 633.0
2272 Male, age 74, both hemispheres 690.9
2053 Male, age 18, unknown 609.3
2140 Male, age 76, both hemispheres 598.7
Pretectal area
nTPM: 677.4
2273 Male, age 74, both hemispheres 773.6
1944 Female, age 72, unknown 750.2
2224 Female, age 72, unknown 747.3
1816 Male, age 51, unknown 708.0
2007 Male, age 72, unknown 694.4
1817 Female, age 42, unknown 681.9
2667 Female, age 75, unknown 660.7
2407 Male, age 75, both hemispheres 639.5
1815 Male, age 53, unknown 635.6
2825 Male, age 18, unknown 632.6
2316 Male, age 76, right hemisphere 527.8
Red nucleus
nTPM: 677.8
2725 Female, age 75, unknown 763.0
1904 Male, age 53, unknown 727.0
1821 Female, age 72, unknown 726.6
2227 Male, age 72, unknown 709.9
2769 Male, age 72, unknown 703.0
1865 Male, age 51, unknown 698.9
2503 Female, age 72, unknown 698.7
1954 Female, age 42, unknown 676.8
2785 Male, age 18, unknown 666.2
2584 Male, age 75, left hemisphere 656.5
2823 Male, age 76, right hemisphere 600.3
2588 Male, age 74, left hemisphere 507.0
Substantia nigra
nTPM: 834.0
1916 Female, age 42, unknown 1286.9
1851 Male, age 51, unknown 966.0
2699 Male, age 18, unknown 863.6
1941 Male, age 53, unknown 821.4
2590 Female, age 75, unknown 802.8
2241 Male, age 72, unknown 795.1
1889 Female, age 72, unknown 761.7
2583 Male, age 75, right hemisphere 723.1
2409 Female, age 72, unknown 681.2
2665 Male, age 74, both hemispheres 638.1
Superior colliculus
nTPM: 650.5
1796 Male, age 53, unknown 751.4
2261 Male, age 18, unknown 741.2
2587 Male, age 74, left hemisphere 702.0
2087 Female, age 72, unknown 699.7
1913 Female, age 42, unknown 674.2
2664 Male, age 75, both hemispheres 648.4
2668 Female, age 75, unknown 627.2
1995 Male, age 72, unknown 603.6
1839 Male, age 51, unknown 566.5
1895 Male, age 76, right hemisphere 490.3
Ventral tegmental area
nTPM: 851.9
1915 Female, age 42, unknown 926.4
2218 Male, age 76, both hemispheres 917.6
2410 Female, age 72, unknown 891.3
2223 Female, age 72, unknown 883.1
1942 Male, age 51, unknown 754.4
2021 Male, age 53, unknown 738.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 694.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 694.1
Samples: 139

Max nTPM: 1689.3
Min nTPM: 314.9
Std nTPM: 233.3
Median nTPM: 646.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1689.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1665.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1550.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1353.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1352.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1154.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1151.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1143.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1107.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1004.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 971.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 997.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 997.4
FF:10158-103A5 76 years, female 997.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 1381.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1332.6
Samples: 4

Max nTPM: 1658.9
Min nTPM: 1108.6
Sample A Female 1658.9
Sample B Female 1141.6
Sample C Male 1421.4
Sample D Male 1108.6
Midbrain
nTPM: 1381.0
Samples: 4

Max nTPM: 2190.3
Min nTPM: 982.0
Sample A Female 2190.3
Sample B Female 1149.0
Sample C Male 1202.7
Sample D Male 982.0
Periaqueductal gray
nTPM: 940.5
Samples: 3

Max nTPM: 1058.7
Min nTPM: 793.7
Sample B Female 969.0
Sample C Male 1058.7
Sample D Male 793.7
Superior colliculi
nTPM: 1260.9
Samples: 4

Max nTPM: 1489.2
Min nTPM: 1121.7
Sample A Female 1489.2
Sample B Female 1221.6
Sample C Male 1211.1
Sample D Male 1121.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1034.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1034.0
Samples: 4

Max nTPM: 1101.3
Min nTPM: 980.0
Sample A Male 1101.3
Sample B Male 980.0
Sample C Female 1022.3
Sample D Female 1032.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
67792203 Antisense, RP_040920_01_D11, Mouse strain C57BL/6J (56 days, male) 10.0

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