MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.8 nTPM
HPA Brain:118.6 nTPM
GTEx:67.8 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:120.1 nTPM
Mouse:95.5 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 118.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.8
2586 Male, age 75, left hemisphere 102.5
1827 Male, age 72, unknown 100.1
2219 Male, age 76, both hemispheres 87.8
2666 Male, age 74, left hemisphere 85.6
1870 Female, age 42, unknown 84.9
1833 Male, age 53, unknown 78.2
2411 Female, age 72, unknown 71.5
1830 Male, age 51, unknown 67.5
2828 Female, age 72, unknown 62.6
2019 Male, age 18, unknown 37.2
Dorsal raphe nucleus
nTPM: 87.1
2047 Male, age 72, unknown 113.9
2298 Female, age 72, unknown 108.5
2750 Male, age 76, both hemispheres 77.6
1828 Male, age 53, unknown 69.5
2016 Female, age 72, unknown 65.9
Inferior colliculus
nTPM: 96.5
2849 Male, age 72, unknown 146.6
1848 Female, age 42, unknown 92.5
2097 Female, age 72, unknown 79.1
1890 Male, age 53, unknown 68.0
Median raphe nucleus
nTPM: 118.6
2220 Male, age 76, midline 118.6
Periaquaductal grey, anterior
nTPM: 106.1
1947 Male, age 18, unknown 135.1
1795 Male, age 51, unknown 101.4
2502 Female, age 75, unknown 81.7
Periaquaductal grey, dorsal
nTPM: 98.9
1840 Male, age 53, unknown 135.1
2850 Male, age 76, both hemispheres 101.7
2464 Female, age 72, unknown 83.1
1831 Male, age 72, unknown 75.5
Periaquaductal grey, lateral
nTPM: 74.8
2140 Male, age 76, both hemispheres 96.0
2053 Male, age 18, unknown 77.2
2272 Male, age 74, both hemispheres 51.3
Pretectal area
nTPM: 75.5
2825 Male, age 18, unknown 116.5
2224 Female, age 72, unknown 113.3
2667 Female, age 75, unknown 81.2
1816 Male, age 51, unknown 76.9
2316 Male, age 76, right hemisphere 76.6
1817 Female, age 42, unknown 67.6
1944 Female, age 72, unknown 63.9
1815 Male, age 53, unknown 63.6
2007 Male, age 72, unknown 63.6
2407 Male, age 75, both hemispheres 63.2
2273 Male, age 74, both hemispheres 44.5
Red nucleus
nTPM: 48.7
2584 Male, age 75, left hemisphere 80.0
2725 Female, age 75, unknown 73.5
2588 Male, age 74, left hemisphere 71.4
2823 Male, age 76, right hemisphere 47.4
2503 Female, age 72, unknown 44.5
2227 Male, age 72, unknown 43.2
2769 Male, age 72, unknown 42.8
1954 Female, age 42, unknown 40.2
1821 Female, age 72, unknown 38.8
2785 Male, age 18, unknown 37.3
1865 Male, age 51, unknown 33.0
1904 Male, age 53, unknown 32.4
Substantia nigra
nTPM: 70.1
2665 Male, age 74, both hemispheres 94.1
1916 Female, age 42, unknown 84.1
2241 Male, age 72, unknown 77.6
2699 Male, age 18, unknown 72.8
1851 Male, age 51, unknown 71.0
1941 Male, age 53, unknown 70.9
1889 Female, age 72, unknown 69.5
2590 Female, age 75, unknown 61.0
2583 Male, age 75, right hemisphere 49.8
2409 Female, age 72, unknown 49.7
Superior colliculus
nTPM: 72.6
2664 Male, age 75, both hemispheres 105.7
1796 Male, age 53, unknown 104.1
1839 Male, age 51, unknown 93.8
1895 Male, age 76, right hemisphere 87.3
2261 Male, age 18, unknown 73.1
2587 Male, age 74, left hemisphere 68.8
2087 Female, age 72, unknown 58.3
2668 Female, age 75, unknown 55.9
1913 Female, age 42, unknown 42.2
1995 Male, age 72, unknown 36.4
Ventral tegmental area
nTPM: 82.4
2021 Male, age 53, unknown 96.4
1915 Female, age 42, unknown 91.9
1942 Male, age 51, unknown 87.3
2223 Female, age 72, unknown 83.2
2218 Male, age 76, both hemispheres 81.0
2410 Female, age 72, unknown 54.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.8
Samples: 139

Max nTPM: 178.5
Min nTPM: 27.5
Std nTPM: 26.1
Median nTPM: 66.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 178.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 169.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 124.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 121.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 118.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 112.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 112.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 106.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 106.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 104.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 103.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 120.1
Samples: 4

Max nTPM: 179.0
Min nTPM: 67.1
Sample A Female 145.0
Sample B Female 89.2
Sample C Male 179.0
Sample D Male 67.1
Midbrain
nTPM: 112.3
Samples: 4

Max nTPM: 168.7
Min nTPM: 83.8
Sample A Female 83.8
Sample B Female 108.3
Sample C Male 88.3
Sample D Male 168.7
Periaqueductal gray
nTPM: 119.6
Samples: 3

Max nTPM: 151.2
Min nTPM: 94.0
Sample B Female 94.0
Sample C Male 151.2
Sample D Male 113.6
Superior colliculi
nTPM: 85.9
Samples: 4

Max nTPM: 114.6
Min nTPM: 46.2
Sample A Female 114.6
Sample B Female 46.2
Sample C Male 71.7
Sample D Male 110.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.5
Samples: 4

Max nTPM: 98.6
Min nTPM: 93.2
Sample A Male 93.2
Sample B Male 98.6
Sample C Female 96.4
Sample D Female 93.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
73817931 Antisense, RP_051214_01_A02, Mouse strain C57BL/6J (56 days, male) 15.6
385781 Antisense, RP_040625_01_E09, Mouse strain C57BL/6J (56 days, male) 8.4

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