MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.7 nTPM
HPA Brain:135.3 nTPM
GTEx:108.7 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:126.5 nTPM
Mouse:114.2 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.1
2586 Male, age 75, left hemisphere 208.3
2019 Male, age 18, unknown 117.4
2828 Female, age 72, unknown 106.0
2666 Male, age 74, left hemisphere 92.3
1827 Male, age 72, unknown 88.2
2411 Female, age 72, unknown 69.7
1830 Male, age 51, unknown 67.8
2219 Male, age 76, both hemispheres 66.9
1833 Male, age 53, unknown 65.7
1870 Female, age 42, unknown 58.7
Dorsal raphe nucleus
nTPM: 86.0
1828 Male, age 53, unknown 108.3
2047 Male, age 72, unknown 95.2
2016 Female, age 72, unknown 92.6
2298 Female, age 72, unknown 78.7
2750 Male, age 76, both hemispheres 55.1
Inferior colliculus
nTPM: 80.3
1890 Male, age 53, unknown 95.3
1848 Female, age 42, unknown 81.7
2097 Female, age 72, unknown 73.6
2849 Male, age 72, unknown 70.6
Median raphe nucleus
nTPM: 47.7
2220 Male, age 76, midline 47.7
Periaquaductal grey, anterior
nTPM: 79.9
2502 Female, age 75, unknown 89.3
1795 Male, age 51, unknown 88.8
1947 Male, age 18, unknown 61.6
Periaquaductal grey, dorsal
nTPM: 72.2
1840 Male, age 53, unknown 81.0
1831 Male, age 72, unknown 80.4
2464 Female, age 72, unknown 69.8
2850 Male, age 76, both hemispheres 57.4
Periaquaductal grey, lateral
nTPM: 65.5
2053 Male, age 18, unknown 77.9
2140 Male, age 76, both hemispheres 59.5
2272 Male, age 74, both hemispheres 59.1
Pretectal area
nTPM: 105.4
1816 Male, age 51, unknown 144.0
1944 Female, age 72, unknown 140.8
1817 Female, age 42, unknown 139.6
2007 Male, age 72, unknown 131.5
2407 Male, age 75, both hemispheres 120.6
1815 Male, age 53, unknown 119.3
2667 Female, age 75, unknown 98.4
2273 Male, age 74, both hemispheres 73.1
2825 Male, age 18, unknown 66.2
2316 Male, age 76, right hemisphere 65.6
2224 Female, age 72, unknown 60.4
Red nucleus
nTPM: 94.5
2584 Male, age 75, left hemisphere 174.7
2785 Male, age 18, unknown 112.6
2588 Male, age 74, left hemisphere 107.1
2725 Female, age 75, unknown 93.7
2503 Female, age 72, unknown 93.6
1821 Female, age 72, unknown 86.6
2769 Male, age 72, unknown 83.6
2227 Male, age 72, unknown 82.2
1954 Female, age 42, unknown 80.8
1904 Male, age 53, unknown 74.6
1865 Male, age 51, unknown 73.3
2823 Male, age 76, right hemisphere 71.6
Substantia nigra
nTPM: 135.3
2583 Male, age 75, right hemisphere 225.0
2665 Male, age 74, both hemispheres 184.3
1851 Male, age 51, unknown 144.4
2699 Male, age 18, unknown 124.7
2590 Female, age 75, unknown 121.7
1916 Female, age 42, unknown 114.2
1941 Male, age 53, unknown 113.6
1889 Female, age 72, unknown 113.4
2409 Female, age 72, unknown 112.3
2241 Male, age 72, unknown 99.3
Superior colliculus
nTPM: 104.5
2664 Male, age 75, both hemispheres 191.8
2087 Female, age 72, unknown 129.6
1995 Male, age 72, unknown 107.7
2261 Male, age 18, unknown 102.6
1796 Male, age 53, unknown 98.2
2668 Female, age 75, unknown 94.7
2587 Male, age 74, left hemisphere 91.9
1839 Male, age 51, unknown 83.7
1913 Female, age 42, unknown 82.4
1895 Male, age 76, right hemisphere 62.5
Ventral tegmental area
nTPM: 89.7
1915 Female, age 42, unknown 100.3
2410 Female, age 72, unknown 99.1
2223 Female, age 72, unknown 97.1
1942 Male, age 51, unknown 95.6
2021 Male, age 53, unknown 81.8
2218 Male, age 76, both hemispheres 64.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.7
Samples: 139

Max nTPM: 283.8
Min nTPM: 29.8
Std nTPM: 45.3
Median nTPM: 101.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 283.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 265.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 217.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 212.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 208.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 196.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 186.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 182.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 179.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 179.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.8
Samples: 4

Max nTPM: 142.3
Min nTPM: 68.2
Sample A Female 142.3
Sample B Female 88.8
Sample C Male 83.7
Sample D Male 68.2
Midbrain
nTPM: 114.3
Samples: 4

Max nTPM: 214.9
Min nTPM: 64.0
Sample A Female 77.3
Sample B Female 64.0
Sample C Male 214.9
Sample D Male 100.8
Periaqueductal gray
nTPM: 66.5
Samples: 3

Max nTPM: 75.2
Min nTPM: 52.4
Sample B Female 75.2
Sample C Male 72.0
Sample D Male 52.4
Superior colliculi
nTPM: 126.5
Samples: 4

Max nTPM: 170.6
Min nTPM: 81.8
Sample A Female 157.6
Sample B Female 81.8
Sample C Male 170.6
Sample D Male 96.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.2
Samples: 4

Max nTPM: 115.0
Min nTPM: 112.9
Sample A Male 112.9
Sample B Male 115.0
Sample C Female 114.0
Sample D Female 115.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70523790 Antisense, RP_050303_01_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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