MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:30.9 nTPM
GTEx:1.8 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:2.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2019 Male, age 18, unknown 46.9
2586 Male, age 75, left hemisphere 37.0
2666 Male, age 74, left hemisphere 25.6
2828 Female, age 72, unknown 21.8
1827 Male, age 72, unknown 21.0
1870 Female, age 42, unknown 19.7
1830 Male, age 51, unknown 18.8
1833 Male, age 53, unknown 14.9
2411 Female, age 72, unknown 14.1
2219 Male, age 76, both hemispheres 12.0
Dorsal raphe nucleus
nTPM: 22.6
2047 Male, age 72, unknown 26.3
1828 Male, age 53, unknown 24.7
2298 Female, age 72, unknown 22.1
2016 Female, age 72, unknown 21.8
2750 Male, age 76, both hemispheres 18.2
Inferior colliculus
nTPM: 24.0
2097 Female, age 72, unknown 35.4
1890 Male, age 53, unknown 26.6
2849 Male, age 72, unknown 18.9
1848 Female, age 42, unknown 15.2
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Periaquaductal grey, anterior
nTPM: 27.0
1795 Male, age 51, unknown 33.8
1947 Male, age 18, unknown 24.1
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 25.5
2850 Male, age 76, both hemispheres 30.0
1831 Male, age 72, unknown 27.1
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 19.4
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 34.9
2140 Male, age 76, both hemispheres 33.2
2053 Male, age 18, unknown 21.3
Pretectal area
nTPM: 30.9
1944 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 41.8
1817 Female, age 42, unknown 34.9
2407 Male, age 75, both hemispheres 33.3
2273 Male, age 74, both hemispheres 32.4
2007 Male, age 72, unknown 29.3
2667 Female, age 75, unknown 26.9
2224 Female, age 72, unknown 26.8
2316 Male, age 76, right hemisphere 23.1
1815 Male, age 53, unknown 21.7
2825 Male, age 18, unknown 17.6
Red nucleus
nTPM: 24.0
2785 Male, age 18, unknown 37.7
2823 Male, age 76, right hemisphere 28.6
1954 Female, age 42, unknown 26.0
1904 Male, age 53, unknown 25.2
1865 Male, age 51, unknown 25.0
2769 Male, age 72, unknown 23.6
2584 Male, age 75, left hemisphere 22.5
2227 Male, age 72, unknown 21.6
2503 Female, age 72, unknown 20.0
2588 Male, age 74, left hemisphere 19.8
2725 Female, age 75, unknown 19.1
1821 Female, age 72, unknown 18.9
Substantia nigra
nTPM: 16.6
2583 Male, age 75, right hemisphere 23.7
1889 Female, age 72, unknown 20.3
2409 Female, age 72, unknown 17.8
2241 Male, age 72, unknown 17.2
2665 Male, age 74, both hemispheres 16.7
1941 Male, age 53, unknown 16.6
2590 Female, age 75, unknown 14.3
1851 Male, age 51, unknown 14.1
1916 Female, age 42, unknown 13.5
2699 Male, age 18, unknown 11.4
Superior colliculus
nTPM: 28.8
2087 Female, age 72, unknown 50.2
2668 Female, age 75, unknown 47.5
2664 Male, age 75, both hemispheres 34.1
1995 Male, age 72, unknown 27.2
2261 Male, age 18, unknown 27.2
1913 Female, age 42, unknown 24.0
1796 Male, age 53, unknown 23.9
2587 Male, age 74, left hemisphere 19.8
1839 Male, age 51, unknown 18.2
1895 Male, age 76, right hemisphere 15.7
Ventral tegmental area
nTPM: 19.7
2021 Male, age 53, unknown 29.6
1915 Female, age 42, unknown 20.6
2218 Male, age 76, both hemispheres 19.9
1942 Male, age 51, unknown 19.3
2410 Female, age 72, unknown 15.4
2223 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 5.1
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 1.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 4.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 4.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 3.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 3.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 3.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 3.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.9
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.3
Sample A Female 5.6
Sample B Female 4.8
Sample C Male 5.8
Sample D Male 3.3
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 13.4
Min nTPM: 2.9
Sample A Female 9.3
Sample B Female 2.9
Sample C Male 13.4
Sample D Male 8.8
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 5.2
Min nTPM: 3.3
Sample B Female 3.3
Sample C Male 5.2
Sample D Male 3.7
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.5
Sample A Female 7.3
Sample B Female 8.3
Sample C Male 6.0
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 2.4
Sample C Female 2.7
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70528276 Antisense, RP_050623_02_C03, Mouse strain C57BL/6J (56 days, male) 0.1

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