HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:23.2 nTPM
GTEx:35.5 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:17.1 nTPM
Allen mouse:10.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008888Antibody CAB004239
Glial cells MediumMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Hippocampus
nTPM: 22.2
2529 Female, age 94, left hemisphere 28.0
2621 Female, age 67, right hemisphere 24.6
1898 Male, age 80, left hemisphere 20.6
2148 Female, age 91, left hemisphere 20.6
1855 Male, age 76, left hemisphere 20.0
1911 Female, age 85, right hemisphere 19.4
Dentate gyrus
nTPM: 20.3
2530 Female, age 94, left hemisphere 24.0
2531 Female, age 67, both hemispheres 23.4
2010 Male, age 76, both hemispheres 20.9
2528 Male, age 74, both hemispheres 18.3
1927 Female, age 91, both hemispheres 17.8
2246 Female, age 85, both hemispheres 17.6
Entorhinal gyrus
nTPM: 23.2
2764 Male, age 80, right hemisphere 25.8
2613 Female, age 94, left hemisphere 24.0
2686 Male, age 75, right hemisphere 23.3
1787 Male, age 76, left hemisphere 23.1
2117 Female, age 91, right hemisphere 22.0
1938 Female, age 85, left hemisphere 20.7
Hippocampus, CA1
nTPM: 19.2
2749 Male, age 80, left hemisphere 22.6
2527 Male, age 74, both hemispheres 20.0
2082 Female, age 91, right hemisphere 19.1
1873 Female, age 85, both hemispheres 17.8
2045 Male, age 76, both hemispheres 16.6
Hippocampus, CA2
nTPM: 19.6
1963 Male, age 80, left hemisphere 23.8
2437 Female, age 94, left hemisphere 20.9
2113 Female, age 91, right hemisphere 19.7
2249 Male, age 74, both hemispheres 18.1
1940 Female, age 85, left hemisphere 17.8
1892 Male, age 76, both hemispheres 17.4
Hippocampus, CA3
nTPM: 22.2
2861 Female, age 67, both hemispheres 28.1
2137 Male, age 80, left hemisphere 23.4
2620 Female, age 94, left hemisphere 22.5
2436 Male, age 74, both hemispheres 22.0
1867 Male, age 76, both hemispheres 20.1
1891 Female, age 85, both hemispheres 17.1
Parahippocampal cortex
nTPM: 20.7
2622 Female, age 67, right hemisphere 24.0
2245 Female, age 91, both hemispheres 23.8
2532 Female, age 72, left hemisphere 22.0
2018 Male, age 76, both hemispheres 21.5
2692 Male, age 74, both hemispheres 21.1
1850 Male, age 80, both hemispheres 20.1
1990 Female, age 91, right hemisphere 20.0
2250 Female, age 67, right hemisphere 19.1
1933 Female, age 85, both hemispheres 19.0
2693 Female, age 94, both hemispheres 16.8
Perirhinal gyrus
nTPM: 20.3
1794 Male, age 80, right hemisphere 22.5
1847 Female, age 91, left hemisphere 22.4
1841 Female, age 85, right hemisphere 19.5
2521 Female, age 94, right hemisphere 19.0
2848 Male, age 76, right hemisphere 17.9
Subiculum
nTPM: 20.6
2619 Male, age 74, both hemispheres 23.6
1977 Female, age 85, both hemispheres 21.8
2438 Female, age 94, left hemisphere 21.1
1901 Male, age 80, both hemispheres 19.4
2042 Male, age 76, both hemispheres 19.1
2729 Female, age 91, right hemisphere 18.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.5
Samples: 197

Max nTPM: 103.5
Min nTPM: 19.7
Std nTPM: 9.9
Median nTPM: 33.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 103.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 81.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 69.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 65.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 65.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 57.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 55.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 55.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 55.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 54.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 54.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.7
FF:10153-102I9 76 years, female 78.2
FF:10169-103B7 60 years, female 59.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Subiculum
nTPM: 24.2
Samples: 4

Max nTPM: 32.0
Min nTPM: 20.6
Sample A Female 32.0
Sample B Female 21.7
Sample C Male 22.6
Sample D Male 20.6
Dorsal hippocampus
nTPM: 23.9
Samples: 4

Max nTPM: 30.4
Min nTPM: 19.5
Sample A Female 30.4
Sample B Female 22.7
Sample C Male 23.0
Sample D Male 19.5
Entorhinal cortex
nTPM: 25.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 21.7
Sample A Female 26.3
Sample B Female 24.2
Sample C Male 27.7
Sample D Male 21.7
Ventral hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 33.9
Min nTPM: 18.4
Sample A Female 22.3
Sample B Female 18.4
Sample C Male 33.9
Sample D Male 28.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 13.6
Sample A Male 14.6
Sample B Male 13.6
Sample C Female 15.8
Sample D Female 15.2
Hippocampal formation
nTPM: 17.1
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 16.1
Sample C Female 18.2
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.4
67810538 Antisense, RP_040922_01_F05, Mouse strain C57BL/6J (56 days, male) 10.4
68196972 Antisense, RP_040922_01_F05, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org