MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA Brain:77.6 nTPM
GTEx:37.3 nTPM
FANTOM5:138.9 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:41.5 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
1830 Male, age 51, unknown 79.7
1833 Male, age 53, unknown 74.8
1870 Female, age 42, unknown 73.7
2019 Male, age 18, unknown 70.7
2586 Male, age 75, left hemisphere 65.6
2411 Female, age 72, unknown 64.2
2828 Female, age 72, unknown 63.9
2666 Male, age 74, left hemisphere 53.7
1827 Male, age 72, unknown 49.5
2219 Male, age 76, both hemispheres 45.1
Dorsal raphe nucleus
nTPM: 56.0
2750 Male, age 76, both hemispheres 74.9
2016 Female, age 72, unknown 59.5
1828 Male, age 53, unknown 56.4
2047 Male, age 72, unknown 45.9
2298 Female, age 72, unknown 43.2
Inferior colliculus
nTPM: 45.2
1848 Female, age 42, unknown 49.7
2849 Male, age 72, unknown 49.5
1890 Male, age 53, unknown 46.6
2097 Female, age 72, unknown 35.1
Median raphe nucleus
nTPM: 55.4
2220 Male, age 76, midline 55.4
Periaquaductal grey, anterior
nTPM: 51.3
2502 Female, age 75, unknown 53.0
1947 Male, age 18, unknown 52.3
1795 Male, age 51, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 48.0
2850 Male, age 76, both hemispheres 59.3
2464 Female, age 72, unknown 47.9
1831 Male, age 72, unknown 46.1
1840 Male, age 53, unknown 38.7
Periaquaductal grey, lateral
nTPM: 58.7
2272 Male, age 74, both hemispheres 68.0
2140 Male, age 76, both hemispheres 58.6
2053 Male, age 18, unknown 49.4
Pretectal area
nTPM: 51.0
2273 Male, age 74, both hemispheres 61.7
2407 Male, age 75, both hemispheres 61.2
2667 Female, age 75, unknown 61.2
1815 Male, age 53, unknown 55.6
2825 Male, age 18, unknown 51.9
2316 Male, age 76, right hemisphere 50.8
2007 Male, age 72, unknown 47.4
1817 Female, age 42, unknown 46.5
2224 Female, age 72, unknown 46.3
1944 Female, age 72, unknown 40.7
1816 Male, age 51, unknown 37.7
Red nucleus
nTPM: 77.6
2227 Male, age 72, unknown 92.4
1865 Male, age 51, unknown 90.7
2769 Male, age 72, unknown 90.6
1904 Male, age 53, unknown 87.0
2823 Male, age 76, right hemisphere 79.5
2785 Male, age 18, unknown 76.4
1821 Female, age 72, unknown 75.4
2588 Male, age 74, left hemisphere 74.1
1954 Female, age 42, unknown 73.3
2584 Male, age 75, left hemisphere 68.6
2503 Female, age 72, unknown 65.9
2725 Female, age 75, unknown 57.5
Substantia nigra
nTPM: 54.1
2699 Male, age 18, unknown 64.9
2583 Male, age 75, right hemisphere 63.4
2590 Female, age 75, unknown 62.0
1851 Male, age 51, unknown 58.3
1889 Female, age 72, unknown 52.5
1916 Female, age 42, unknown 51.3
2409 Female, age 72, unknown 49.2
1941 Male, age 53, unknown 49.1
2665 Male, age 74, both hemispheres 48.2
2241 Male, age 72, unknown 41.8
Superior colliculus
nTPM: 54.9
1913 Female, age 42, unknown 78.5
1995 Male, age 72, unknown 73.3
2587 Male, age 74, left hemisphere 59.8
2664 Male, age 75, both hemispheres 52.2
1839 Male, age 51, unknown 51.5
1895 Male, age 76, right hemisphere 49.9
2668 Female, age 75, unknown 49.7
1796 Male, age 53, unknown 48.5
2261 Male, age 18, unknown 44.8
2087 Female, age 72, unknown 41.2
Ventral tegmental area
nTPM: 61.3
2223 Female, age 72, unknown 90.9
2218 Male, age 76, both hemispheres 60.1
2021 Male, age 53, unknown 56.4
2410 Female, age 72, unknown 56.4
1942 Male, age 51, unknown 54.3
1915 Female, age 42, unknown 49.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.3
Samples: 139

Max nTPM: 105.5
Min nTPM: 2.0
Std nTPM: 16.2
Median nTPM: 34.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 99.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 81.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 70.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 69.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 68.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 66.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 57.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 57.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.9
FF:10158-103A5 76 years, female 138.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.6
Samples: 4

Max nTPM: 76.9
Min nTPM: 52.2
Sample A Female 58.0
Sample B Female 52.2
Sample C Male 63.1
Sample D Male 76.9
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 96.5
Min nTPM: 35.1
Sample A Female 96.5
Sample B Female 50.3
Sample C Male 43.7
Sample D Male 35.1
Periaqueductal gray
nTPM: 47.3
Samples: 3

Max nTPM: 48.3
Min nTPM: 46.6
Sample B Female 46.6
Sample C Male 48.3
Sample D Male 47.1
Superior colliculi
nTPM: 41.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 30.7
Sample A Female 43.7
Sample B Female 30.7
Sample C Male 42.4
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 51.2
Min nTPM: 31.4
Sample A Male 47.5
Sample B Male 31.4
Sample C Female 36.0
Sample D Female 51.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
75774686 Antisense, RP_060530_01_D11, Mouse strain C57BL/6J (56 days, male) 15.7
68300884 Antisense, RP_041129_02_D01, Mouse strain C57BL/6J (56 days, male) 9.4

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