MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:36.7 nTPM
GTEx:17.0 nTPM
FANTOM5:122.1 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:24.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.5
1870 Female, age 42, unknown 36.6
2411 Female, age 72, unknown 36.0
1833 Male, age 53, unknown 35.4
1830 Male, age 51, unknown 35.3
2019 Male, age 18, unknown 33.0
2666 Male, age 74, left hemisphere 29.6
2219 Male, age 76, both hemispheres 28.6
2586 Male, age 75, left hemisphere 27.5
2828 Female, age 72, unknown 26.8
1827 Male, age 72, unknown 26.5
Dorsal raphe nucleus
nTPM: 28.0
2750 Male, age 76, both hemispheres 36.7
1828 Male, age 53, unknown 28.5
2016 Female, age 72, unknown 27.9
2047 Male, age 72, unknown 23.6
2298 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 28.3
2849 Male, age 72, unknown 31.4
2097 Female, age 72, unknown 27.5
1848 Female, age 42, unknown 27.2
1890 Male, age 53, unknown 27.1
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Periaquaductal grey, anterior
nTPM: 25.6
2502 Female, age 75, unknown 29.9
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 24.4
2464 Female, age 72, unknown 28.5
1831 Male, age 72, unknown 23.6
1840 Male, age 53, unknown 23.6
2850 Male, age 76, both hemispheres 21.9
Periaquaductal grey, lateral
nTPM: 22.1
2053 Male, age 18, unknown 23.7
2140 Male, age 76, both hemispheres 22.0
2272 Male, age 74, both hemispheres 20.6
Pretectal area
nTPM: 25.7
1815 Male, age 53, unknown 29.7
2316 Male, age 76, right hemisphere 29.0
2407 Male, age 75, both hemispheres 27.7
2224 Female, age 72, unknown 27.5
1817 Female, age 42, unknown 26.8
2007 Male, age 72, unknown 26.2
2825 Male, age 18, unknown 24.8
2273 Male, age 74, both hemispheres 23.9
2667 Female, age 75, unknown 23.2
1944 Female, age 72, unknown 22.4
1816 Male, age 51, unknown 22.0
Red nucleus
nTPM: 36.7
2503 Female, age 72, unknown 41.6
1904 Male, age 53, unknown 41.2
2785 Male, age 18, unknown 38.6
1865 Male, age 51, unknown 38.4
1821 Female, age 72, unknown 37.8
2769 Male, age 72, unknown 37.4
1954 Female, age 42, unknown 37.0
2227 Male, age 72, unknown 36.6
2588 Male, age 74, left hemisphere 35.8
2823 Male, age 76, right hemisphere 34.5
2725 Female, age 75, unknown 32.8
2584 Male, age 75, left hemisphere 28.9
Substantia nigra
nTPM: 26.5
1889 Female, age 72, unknown 29.6
1851 Male, age 51, unknown 29.3
2583 Male, age 75, right hemisphere 28.2
2241 Male, age 72, unknown 28.0
2590 Female, age 75, unknown 26.7
2699 Male, age 18, unknown 26.1
2409 Female, age 72, unknown 25.9
1941 Male, age 53, unknown 23.9
1916 Female, age 42, unknown 23.6
2665 Male, age 74, both hemispheres 23.3
Superior colliculus
nTPM: 28.5
1913 Female, age 42, unknown 37.8
1995 Male, age 72, unknown 32.3
2587 Male, age 74, left hemisphere 31.5
1895 Male, age 76, right hemisphere 30.8
1839 Male, age 51, unknown 29.3
2668 Female, age 75, unknown 29.0
1796 Male, age 53, unknown 25.3
2261 Male, age 18, unknown 24.0
2087 Female, age 72, unknown 22.4
2664 Male, age 75, both hemispheres 22.4
Ventral tegmental area
nTPM: 27.8
2223 Female, age 72, unknown 32.0
2410 Female, age 72, unknown 28.4
1942 Male, age 51, unknown 28.0
1915 Female, age 42, unknown 27.7
2218 Male, age 76, both hemispheres 26.5
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 37.0
Min nTPM: 7.9
Std nTPM: 5.2
Median nTPM: 15.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 27.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 26.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 25.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.1
FF:10158-103A5 76 years, female 122.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 10.4
Sample A Female 11.2
Sample B Female 10.4
Sample C Male 10.5
Sample D Male 11.1
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.7
Sample A Female 15.2
Sample B Female 13.9
Sample C Male 11.3
Sample D Male 9.7
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.1
Min nTPM: 8.8
Sample B Female 13.1
Sample C Male 8.8
Sample D Male 10.6
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 11.2
Sample C Male 10.7
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 25.7
Sample C Female 26.2
Sample D Female 25.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70430784 Antisense, RP_050614_02_A08, Mouse strain C57BL/6J (56 days, male) 0.6

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