MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:31.8 nTPM
GTEx:7.8 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:9.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
1870 Female, age 42, unknown 32.4
1833 Male, age 53, unknown 32.3
1830 Male, age 51, unknown 31.0
2828 Female, age 72, unknown 29.4
2219 Male, age 76, both hemispheres 28.1
2019 Male, age 18, unknown 27.6
2411 Female, age 72, unknown 27.1
2666 Male, age 74, left hemisphere 26.7
2586 Male, age 75, left hemisphere 26.3
1827 Male, age 72, unknown 25.4
Dorsal raphe nucleus
nTPM: 26.7
2016 Female, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 29.9
1828 Male, age 53, unknown 27.1
2298 Female, age 72, unknown 23.4
2047 Male, age 72, unknown 22.8
Inferior colliculus
nTPM: 26.3
2849 Male, age 72, unknown 28.5
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 25.6
2097 Female, age 72, unknown 24.5
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 26.5
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 26.6
1795 Male, age 51, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 31.0
2464 Female, age 72, unknown 26.0
1831 Male, age 72, unknown 25.3
1840 Male, age 53, unknown 24.6
Periaquaductal grey, lateral
nTPM: 27.6
2140 Male, age 76, both hemispheres 30.3
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 25.4
Pretectal area
nTPM: 25.7
2316 Male, age 76, right hemisphere 30.3
2825 Male, age 18, unknown 28.9
1815 Male, age 53, unknown 27.8
2667 Female, age 75, unknown 27.6
2273 Male, age 74, both hemispheres 27.5
1817 Female, age 42, unknown 26.2
2407 Male, age 75, both hemispheres 25.5
2224 Female, age 72, unknown 25.1
1944 Female, age 72, unknown 21.5
2007 Male, age 72, unknown 21.5
1816 Male, age 51, unknown 20.3
Red nucleus
nTPM: 31.8
1865 Male, age 51, unknown 37.9
2823 Male, age 76, right hemisphere 35.4
1954 Female, age 42, unknown 34.9
2227 Male, age 72, unknown 33.5
1821 Female, age 72, unknown 33.3
1904 Male, age 53, unknown 33.1
2503 Female, age 72, unknown 32.3
2769 Male, age 72, unknown 31.1
2785 Male, age 18, unknown 29.8
2725 Female, age 75, unknown 28.0
2588 Male, age 74, left hemisphere 26.3
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 25.8
2699 Male, age 18, unknown 31.9
2241 Male, age 72, unknown 27.8
2665 Male, age 74, both hemispheres 27.7
2590 Female, age 75, unknown 26.1
1851 Male, age 51, unknown 25.8
2583 Male, age 75, right hemisphere 24.7
2409 Female, age 72, unknown 24.6
1941 Male, age 53, unknown 23.9
1889 Female, age 72, unknown 23.5
1916 Female, age 42, unknown 21.7
Superior colliculus
nTPM: 27.1
1913 Female, age 42, unknown 36.1
1995 Male, age 72, unknown 35.2
1895 Male, age 76, right hemisphere 29.4
1839 Male, age 51, unknown 29.2
2587 Male, age 74, left hemisphere 25.8
2668 Female, age 75, unknown 25.3
2087 Female, age 72, unknown 23.6
1796 Male, age 53, unknown 23.5
2664 Male, age 75, both hemispheres 22.3
2261 Male, age 18, unknown 20.9
Ventral tegmental area
nTPM: 26.2
2223 Female, age 72, unknown 28.2
2410 Female, age 72, unknown 28.0
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 26.3
1942 Male, age 51, unknown 24.7
1915 Female, age 42, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.8
Samples: 139

Max nTPM: 15.3
Min nTPM: 3.4
Std nTPM: 1.9
Median nTPM: 7.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 11.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 11.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 11.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 10.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 10.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 10.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 37.6
Min nTPM: 27.8
Sample A Female 27.8
Sample B Female 33.6
Sample C Male 28.4
Sample D Male 37.6
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 39.2
Min nTPM: 23.7
Sample A Female 39.2
Sample B Female 29.2
Sample C Male 23.7
Sample D Male 24.0
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 30.3
Min nTPM: 28.7
Sample B Female 30.3
Sample C Male 28.9
Sample D Male 28.7
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 36.0
Min nTPM: 25.5
Sample A Female 28.8
Sample B Female 36.0
Sample C Male 25.5
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.8
Sample A Male 8.8
Sample B Male 10.1
Sample C Female 8.8
Sample D Female 8.9

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