HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi 		120.075
Protein expressioni No data
RNA expressioni
Consensus:19.0 nTPM
HPA Brain:53.6 nTPM
GTEx:19.0 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:60.4 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA022862
Hippocampal formation mean intensity 120.075
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 8.672
Molecular layer of the dentate gyrus 1.147
Granular dentate gyrus 1.902
CA1 - oriens layer 3.074
CA1 - pyramidal layer 44.035
CA1 - radiatum layer 42.507
CA2 - oriens layer 120.075
CA2 - pyramidal layer 53.050
CA2 - radiatum layer 60.888
CA3 - oriens layer 45.337
CA3 - pyramidal layer 48.079
CA3 - radiatum layer 29.912
Stratum lucidum 12.274
Lacunosum moleculare 68.725
Subiculum 49.985

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.6
Sample id Sample description nTPM
Hippocampus
nTPM: 25.1
1911 Female, age 85, right hemisphere 28.6
2148 Female, age 91, left hemisphere 28.6
1898 Male, age 80, left hemisphere 26.4
2621 Female, age 67, right hemisphere 23.8
2529 Female, age 94, left hemisphere 23.2
1855 Male, age 76, left hemisphere 20.0
Dentate gyrus
nTPM: 31.6
2531 Female, age 67, both hemispheres 51.3
1927 Female, age 91, both hemispheres 39.6
2528 Male, age 74, both hemispheres 34.3
2246 Female, age 85, both hemispheres 32.2
2010 Male, age 76, both hemispheres 16.3
2530 Female, age 94, left hemisphere 16.0
Entorhinal gyrus
nTPM: 28.8
2764 Male, age 80, right hemisphere 36.1
2613 Female, age 94, left hemisphere 32.7
1938 Female, age 85, left hemisphere 28.0
1787 Male, age 76, left hemisphere 27.4
2686 Male, age 75, right hemisphere 25.7
2117 Female, age 91, right hemisphere 23.1
Hippocampus, CA1
nTPM: 35.2
2749 Male, age 80, left hemisphere 45.5
2045 Male, age 76, both hemispheres 39.8
2082 Female, age 91, right hemisphere 34.4
2527 Male, age 74, both hemispheres 28.7
1873 Female, age 85, both hemispheres 27.6
Hippocampus, CA2
nTPM: 29.9
1940 Female, age 85, left hemisphere 34.6
1892 Male, age 76, both hemispheres 33.8
2113 Female, age 91, right hemisphere 33.2
2437 Female, age 94, left hemisphere 31.2
2249 Male, age 74, both hemispheres 30.0
1963 Male, age 80, left hemisphere 16.7
Hippocampus, CA3
nTPM: 38.4
2137 Male, age 80, left hemisphere 58.3
2620 Female, age 94, left hemisphere 55.0
2861 Female, age 67, both hemispheres 31.5
1867 Male, age 76, both hemispheres 31.4
1891 Female, age 85, both hemispheres 27.3
2436 Male, age 74, both hemispheres 27.3
Parahippocampal cortex
nTPM: 39.5
2693 Female, age 94, both hemispheres 56.4
1850 Male, age 80, both hemispheres 49.8
2245 Female, age 91, both hemispheres 47.3
2250 Female, age 67, right hemisphere 42.1
2622 Female, age 67, right hemisphere 41.1
1933 Female, age 85, both hemispheres 39.8
2532 Female, age 72, left hemisphere 34.2
1990 Female, age 91, right hemisphere 32.8
2018 Male, age 76, both hemispheres 28.9
2692 Male, age 74, both hemispheres 22.8
Perirhinal gyrus
nTPM: 53.6
1794 Male, age 80, right hemisphere 62.7
1841 Female, age 85, right hemisphere 62.0
2521 Female, age 94, right hemisphere 56.5
1847 Female, age 91, left hemisphere 48.6
2848 Male, age 76, right hemisphere 38.2
Subiculum
nTPM: 27.4
1901 Male, age 80, both hemispheres 33.6
1977 Female, age 85, both hemispheres 31.0
2619 Male, age 74, both hemispheres 27.6
2729 Female, age 91, right hemisphere 27.0
2438 Female, age 94, left hemisphere 23.9
2042 Male, age 76, both hemispheres 21.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.0
Samples: 197

Max nTPM: 60.7
Min nTPM: 1.1
Std nTPM: 11.8
Median nTPM: 16.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 60.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 53.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 49.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 49.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 49.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 44.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 44.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 43.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 42.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 42.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 42.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.6
FF:10169-103B7 60 years, female 64.3
FF:10153-102I9 76 years, female 52.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Subiculum
nTPM: 29.9
Samples: 4

Max nTPM: 39.9
Min nTPM: 24.9
Sample A Female 39.9
Sample B Female 26.1
Sample C Male 24.9
Sample D Male 28.5
Dorsal hippocampus
nTPM: 15.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 15.1
Sample C Male 15.9
Sample D Male 17.0
Entorhinal cortex
nTPM: 50.8
Samples: 4

Max nTPM: 62.6
Min nTPM: 42.9
Sample A Female 62.6
Sample B Female 54.6
Sample C Male 43.2
Sample D Male 42.9
Ventral hippocampus
nTPM: 11.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 11.3
Sample C Male 6.3
Sample D Male 20.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 60.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 60.4
Samples: 4

Max nTPM: 69.6
Min nTPM: 52.3
Sample A Male 69.6
Sample B Male 64.9
Sample C Female 54.7
Sample D Female 52.3
Hippocampal formation
nTPM: 47.7
Samples: 4

Max nTPM: 51.3
Min nTPM: 45.0
Sample A Male 48.7
Sample B Male 51.3
Sample C Female 45.9
Sample D Female 45.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
70546039 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 1.8
71924387 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org