MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:302.0 nTPM
HPA Brain:391.2 nTPM
GTEx:302.0 nTPM
FANTOM5:152.9 Scaled Tags Per Million
Mouse:637.3 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 391.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 299.0
1827 Male, age 72, unknown 340.8
2666 Male, age 74, left hemisphere 324.7
1870 Female, age 42, unknown 321.8
2219 Male, age 76, both hemispheres 316.5
2019 Male, age 18, unknown 304.5
1833 Male, age 53, unknown 297.4
2411 Female, age 72, unknown 285.2
1830 Male, age 51, unknown 278.6
2828 Female, age 72, unknown 278.5
2586 Male, age 75, left hemisphere 241.7
Dorsal raphe nucleus
nTPM: 318.4
1828 Male, age 53, unknown 343.7
2298 Female, age 72, unknown 325.0
2750 Male, age 76, both hemispheres 324.4
2047 Male, age 72, unknown 317.8
2016 Female, age 72, unknown 281.1
Inferior colliculus
nTPM: 310.3
2097 Female, age 72, unknown 331.7
1890 Male, age 53, unknown 306.5
2849 Male, age 72, unknown 306.4
1848 Female, age 42, unknown 296.4
Median raphe nucleus
nTPM: 391.2
2220 Male, age 76, midline 391.2
Periaquaductal grey, anterior
nTPM: 312.2
1947 Male, age 18, unknown 358.6
1795 Male, age 51, unknown 302.4
2502 Female, age 75, unknown 275.6
Periaquaductal grey, dorsal
nTPM: 292.8
2850 Male, age 76, both hemispheres 324.3
1831 Male, age 72, unknown 311.1
1840 Male, age 53, unknown 299.1
2464 Female, age 72, unknown 236.8
Periaquaductal grey, lateral
nTPM: 270.7
2272 Male, age 74, both hemispheres 277.8
2053 Male, age 18, unknown 276.0
2140 Male, age 76, both hemispheres 258.2
Pretectal area
nTPM: 337.2
1817 Female, age 42, unknown 412.4
1944 Female, age 72, unknown 394.1
1816 Male, age 51, unknown 388.1
2007 Male, age 72, unknown 379.7
1815 Male, age 53, unknown 358.8
2224 Female, age 72, unknown 317.6
2667 Female, age 75, unknown 315.1
2273 Male, age 74, both hemispheres 297.4
2825 Male, age 18, unknown 294.5
2407 Male, age 75, both hemispheres 286.2
2316 Male, age 76, right hemisphere 265.4
Red nucleus
nTPM: 291.1
1821 Female, age 72, unknown 372.0
2725 Female, age 75, unknown 360.3
2503 Female, age 72, unknown 299.2
2785 Male, age 18, unknown 292.1
1954 Female, age 42, unknown 290.8
2584 Male, age 75, left hemisphere 288.9
2823 Male, age 76, right hemisphere 282.4
2588 Male, age 74, left hemisphere 271.9
1865 Male, age 51, unknown 267.8
2769 Male, age 72, unknown 256.9
2227 Male, age 72, unknown 256.8
1904 Male, age 53, unknown 254.0
Substantia nigra
nTPM: 342.2
1916 Female, age 42, unknown 429.3
1889 Female, age 72, unknown 375.2
2241 Male, age 72, unknown 370.7
1941 Male, age 53, unknown 366.2
1851 Male, age 51, unknown 353.1
2699 Male, age 18, unknown 326.9
2665 Male, age 74, both hemispheres 325.7
2409 Female, age 72, unknown 313.0
2583 Male, age 75, right hemisphere 290.6
2590 Female, age 75, unknown 270.8
Superior colliculus
nTPM: 290.9
2668 Female, age 75, unknown 346.3
2587 Male, age 74, left hemisphere 322.7
2087 Female, age 72, unknown 315.0
1895 Male, age 76, right hemisphere 313.2
1839 Male, age 51, unknown 296.7
1796 Male, age 53, unknown 293.1
2261 Male, age 18, unknown 278.9
1913 Female, age 42, unknown 262.5
1995 Male, age 72, unknown 242.9
2664 Male, age 75, both hemispheres 237.8
Ventral tegmental area
nTPM: 317.3
2218 Male, age 76, both hemispheres 368.9
1915 Female, age 42, unknown 361.2
1942 Male, age 51, unknown 300.4
2410 Female, age 72, unknown 299.3
2223 Female, age 72, unknown 296.8
2021 Male, age 53, unknown 277.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 302.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 302.0
Samples: 139

Max nTPM: 648.2
Min nTPM: 183.7
Std nTPM: 85.7
Median nTPM: 282.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 648.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 632.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 585.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 560.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 494.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 479.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 469.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 455.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 435.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 431.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 423.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.9
FF:10158-103A5 76 years, female 152.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 637.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 637.3
Samples: 4

Max nTPM: 654.2
Min nTPM: 622.2
Sample A Male 654.2
Sample B Male 648.1
Sample C Female 622.2
Sample D Female 624.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
71763798 Antisense, RP_050921_02_F08, Mouse strain C57BL/6J (56 days, male) 6.2

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