MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.2 nTPM
HPA Brain:45.2 nTPM
GTEx:41.2 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:66.6 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.7
2586 Male, age 75, left hemisphere 49.9
2019 Male, age 18, unknown 48.4
2411 Female, age 72, unknown 47.7
2828 Female, age 72, unknown 43.0
1870 Female, age 42, unknown 39.9
1830 Male, age 51, unknown 39.5
1833 Male, age 53, unknown 39.3
1827 Male, age 72, unknown 37.8
2219 Male, age 76, both hemispheres 31.2
2666 Male, age 74, left hemisphere 30.2
Dorsal raphe nucleus
nTPM: 45.2
2750 Male, age 76, both hemispheres 53.7
2047 Male, age 72, unknown 48.3
2298 Female, age 72, unknown 47.1
1828 Male, age 53, unknown 42.2
2016 Female, age 72, unknown 34.8
Inferior colliculus
nTPM: 31.5
1848 Female, age 42, unknown 33.6
2097 Female, age 72, unknown 30.9
1890 Male, age 53, unknown 30.8
2849 Male, age 72, unknown 30.7
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 37.6
1947 Male, age 18, unknown 35.4
Periaquaductal grey, dorsal
nTPM: 28.8
2464 Female, age 72, unknown 32.6
1840 Male, age 53, unknown 30.1
2850 Male, age 76, both hemispheres 29.8
1831 Male, age 72, unknown 22.6
Periaquaductal grey, lateral
nTPM: 32.6
2272 Male, age 74, both hemispheres 37.7
2140 Male, age 76, both hemispheres 30.9
2053 Male, age 18, unknown 29.3
Pretectal area
nTPM: 35.6
2007 Male, age 72, unknown 44.3
2667 Female, age 75, unknown 41.7
1817 Female, age 42, unknown 38.5
2825 Male, age 18, unknown 35.5
1815 Male, age 53, unknown 35.3
2407 Male, age 75, both hemispheres 34.0
2273 Male, age 74, both hemispheres 33.7
2224 Female, age 72, unknown 33.3
1944 Female, age 72, unknown 33.0
1816 Male, age 51, unknown 32.0
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 40.0
2785 Male, age 18, unknown 47.7
2227 Male, age 72, unknown 40.9
2725 Female, age 75, unknown 40.9
1821 Female, age 72, unknown 40.7
2769 Male, age 72, unknown 40.7
2588 Male, age 74, left hemisphere 40.3
1865 Male, age 51, unknown 40.2
2823 Male, age 76, right hemisphere 40.1
2503 Female, age 72, unknown 38.4
1904 Male, age 53, unknown 37.5
1954 Female, age 42, unknown 36.5
2584 Male, age 75, left hemisphere 35.6
Substantia nigra
nTPM: 40.0
1916 Female, age 42, unknown 52.2
1851 Male, age 51, unknown 45.9
1941 Male, age 53, unknown 45.5
2241 Male, age 72, unknown 43.2
2409 Female, age 72, unknown 41.0
1889 Female, age 72, unknown 37.3
2665 Male, age 74, both hemispheres 36.8
2699 Male, age 18, unknown 35.4
2583 Male, age 75, right hemisphere 33.9
2590 Female, age 75, unknown 28.5
Superior colliculus
nTPM: 34.7
2664 Male, age 75, both hemispheres 43.2
1796 Male, age 53, unknown 37.5
2587 Male, age 74, left hemisphere 37.0
1839 Male, age 51, unknown 36.1
1895 Male, age 76, right hemisphere 35.2
2668 Female, age 75, unknown 34.4
2261 Male, age 18, unknown 32.5
2087 Female, age 72, unknown 31.1
1995 Male, age 72, unknown 30.5
1913 Female, age 42, unknown 29.3
Ventral tegmental area
nTPM: 39.8
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 44.2
1915 Female, age 42, unknown 40.4
1942 Male, age 51, unknown 37.7
2021 Male, age 53, unknown 35.3
2218 Male, age 76, both hemispheres 35.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.2
Samples: 139

Max nTPM: 65.9
Min nTPM: 17.9
Std nTPM: 9.8
Median nTPM: 40.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 65.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 64.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 61.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 60.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 57.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 56.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 55.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 42.8
Min nTPM: 24.5
Sample A Female 42.8
Sample B Female 24.5
Sample C Male 30.9
Sample D Male 33.0
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 50.8
Min nTPM: 24.4
Sample A Female 50.8
Sample B Female 32.3
Sample C Male 28.4
Sample D Male 24.4
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 27.2
Min nTPM: 20.7
Sample B Female 27.2
Sample C Male 23.3
Sample D Male 20.7
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 36.8
Min nTPM: 24.4
Sample A Female 36.8
Sample B Female 24.4
Sample C Male 29.0
Sample D Male 29.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.6
Samples: 4

Max nTPM: 72.0
Min nTPM: 62.7
Sample A Male 67.6
Sample B Male 62.7
Sample C Female 64.2
Sample D Female 72.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
69095961 Antisense, RP_050324_02_E10, Mouse strain C57BL/6J (56 days, male) 13.6
74736360 Antisense, RP_060306_01_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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