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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
4.9
nTPM
HPA Brain:
84.9
nTPM
GTEx:
4.9
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
84.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 82.4
2219
Male, age 76, both hemispheres
96.6
1830
Male, age 51, unknown
96.1
1833
Male, age 53, unknown
87.1
2666
Male, age 74, left hemisphere
86.9
2019
Male, age 18, unknown
82.0
2586
Male, age 75, left hemisphere
80.1
1827
Male, age 72, unknown
76.9
2411
Female, age 72, unknown
75.8
2828
Female, age 72, unknown
74.8
1870
Female, age 42, unknown
68.0
Dorsal raphe nucleus nTPM: 74.0
2047
Male, age 72, unknown
85.8
2750
Male, age 76, both hemispheres
80.1
2016
Female, age 72, unknown
75.7
1828
Male, age 53, unknown
70.5
2298
Female, age 72, unknown
58.0
Inferior colliculus nTPM: 82.1
2849
Male, age 72, unknown
93.1
1890
Male, age 53, unknown
87.2
1848
Female, age 42, unknown
80.3
2097
Female, age 72, unknown
68.0
Median raphe nucleus nTPM: 76.8
2220
Male, age 76, midline
76.8
Periaquaductal grey, anterior nTPM: 75.3
1947
Male, age 18, unknown
81.4
1795
Male, age 51, unknown
72.5
2502
Female, age 75, unknown
71.8
Periaquaductal grey, dorsal nTPM: 83.7
2464
Female, age 72, unknown
87.6
2850
Male, age 76, both hemispheres
87.5
1831
Male, age 72, unknown
82.4
1840
Male, age 53, unknown
77.4
Periaquaductal grey, lateral nTPM: 84.9
2140
Male, age 76, both hemispheres
94.5
2053
Male, age 18, unknown
81.6
2272
Male, age 74, both hemispheres
78.7
Pretectal area nTPM: 78.3
2316
Male, age 76, right hemisphere
102.2
2407
Male, age 75, both hemispheres
97.6
2667
Female, age 75, unknown
87.7
2825
Male, age 18, unknown
84.2
1944
Female, age 72, unknown
82.0
2224
Female, age 72, unknown
75.2
2273
Male, age 74, both hemispheres
73.3
1815
Male, age 53, unknown
70.3
1816
Male, age 51, unknown
67.1
2007
Male, age 72, unknown
63.2
1817
Female, age 42, unknown
58.6
Red nucleus nTPM: 79.3
2823
Male, age 76, right hemisphere
102.0
2584
Male, age 75, left hemisphere
94.9
2588
Male, age 74, left hemisphere
86.7
1865
Male, age 51, unknown
85.4
2227
Male, age 72, unknown
80.4
1904
Male, age 53, unknown
78.6
2769
Male, age 72, unknown
75.6
2503
Female, age 72, unknown
74.9
2785
Male, age 18, unknown
72.7
1954
Female, age 42, unknown
71.1
2725
Female, age 75, unknown
70.2
1821
Female, age 72, unknown
58.7
Substantia nigra nTPM: 78.2
1941
Male, age 53, unknown
88.6
2583
Male, age 75, right hemisphere
86.6
2590
Female, age 75, unknown
83.2
2241
Male, age 72, unknown
83.1
2409
Female, age 72, unknown
82.1
2665
Male, age 74, both hemispheres
77.8
2699
Male, age 18, unknown
77.0
1889
Female, age 72, unknown
70.2
1851
Male, age 51, unknown
67.0
1916
Female, age 42, unknown
65.9
Superior colliculus nTPM: 79.9
1895
Male, age 76, right hemisphere
94.2
2664
Male, age 75, both hemispheres
89.0
2087
Female, age 72, unknown
87.6
1839
Male, age 51, unknown
79.3
2587
Male, age 74, left hemisphere
77.6
2668
Female, age 75, unknown
76.6
1913
Female, age 42, unknown
76.2
2261
Male, age 18, unknown
76.1
1995
Male, age 72, unknown
74.6
1796
Male, age 53, unknown
67.4
Ventral tegmental area nTPM: 73.9
2021
Male, age 53, unknown
82.7
1942
Male, age 51, unknown
79.9
2218
Male, age 76, both hemispheres
75.7
2223
Female, age 72, unknown
74.5
2410
Female, age 72, unknown
67.3
1915
Female, age 42, unknown
63.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
4.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 4.9
Samples: 139
Max nTPM: 12.5
Min nTPM: 0.9
Std nTPM: 1.8
Median nTPM: 4.7