MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:25.8 nTPM
GTEx:8.5 nTPM
FANTOM5:54.0 Scaled Tags Per Million
Pig:7.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
1830 Male, age 51, unknown 26.6
2411 Female, age 72, unknown 25.9
1870 Female, age 42, unknown 25.8
2019 Male, age 18, unknown 25.3
1833 Male, age 53, unknown 25.2
1827 Male, age 72, unknown 24.2
2828 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 21.7
2586 Male, age 75, left hemisphere 21.6
2666 Male, age 74, left hemisphere 20.5
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 24.5
2016 Female, age 72, unknown 21.8
2298 Female, age 72, unknown 21.2
1828 Male, age 53, unknown 21.1
2047 Male, age 72, unknown 20.1
Inferior colliculus
nTPM: 22.6
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 22.7
1848 Female, age 42, unknown 22.2
2097 Female, age 72, unknown 22.0
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 27.4
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 23.3
1840 Male, age 53, unknown 25.6
2464 Female, age 72, unknown 23.6
2850 Male, age 76, both hemispheres 23.1
1831 Male, age 72, unknown 21.1
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 22.7
2272 Male, age 74, both hemispheres 21.5
2140 Male, age 76, both hemispheres 20.4
Pretectal area
nTPM: 23.0
2825 Male, age 18, unknown 25.4
1815 Male, age 53, unknown 24.5
2007 Male, age 72, unknown 24.5
1816 Male, age 51, unknown 24.3
2407 Male, age 75, both hemispheres 23.9
2667 Female, age 75, unknown 23.1
2224 Female, age 72, unknown 23.0
2316 Male, age 76, right hemisphere 22.2
1944 Female, age 72, unknown 20.8
1817 Female, age 42, unknown 20.7
2273 Male, age 74, both hemispheres 20.5
Red nucleus
nTPM: 25.8
2588 Male, age 74, left hemisphere 30.1
1821 Female, age 72, unknown 28.5
2503 Female, age 72, unknown 28.4
2823 Male, age 76, right hemisphere 28.3
1865 Male, age 51, unknown 26.2
1904 Male, age 53, unknown 26.1
2584 Male, age 75, left hemisphere 24.9
2769 Male, age 72, unknown 24.9
1954 Female, age 42, unknown 24.5
2227 Male, age 72, unknown 24.1
2785 Male, age 18, unknown 22.4
2725 Female, age 75, unknown 20.6
Substantia nigra
nTPM: 23.4
2590 Female, age 75, unknown 27.8
2241 Male, age 72, unknown 26.3
2409 Female, age 72, unknown 25.1
1889 Female, age 72, unknown 23.9
2583 Male, age 75, right hemisphere 23.9
1851 Male, age 51, unknown 22.4
2665 Male, age 74, both hemispheres 22.0
1941 Male, age 53, unknown 21.7
1916 Female, age 42, unknown 21.0
2699 Male, age 18, unknown 19.6
Superior colliculus
nTPM: 23.4
1995 Male, age 72, unknown 24.8
2587 Male, age 74, left hemisphere 24.8
1839 Male, age 51, unknown 24.2
1895 Male, age 76, right hemisphere 23.9
1913 Female, age 42, unknown 23.8
2087 Female, age 72, unknown 23.1
2261 Male, age 18, unknown 22.6
1796 Male, age 53, unknown 22.3
2668 Female, age 75, unknown 22.1
2664 Male, age 75, both hemispheres 21.9
Ventral tegmental area
nTPM: 22.5
2410 Female, age 72, unknown 24.9
1915 Female, age 42, unknown 24.1
1942 Male, age 51, unknown 23.1
2218 Male, age 76, both hemispheres 21.9
2223 Female, age 72, unknown 21.3
2021 Male, age 53, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 21.1
Min nTPM: 3.4
Std nTPM: 3.3
Median nTPM: 7.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 20.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 17.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 12.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.0
FF:10158-103A5 76 years, female 54.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.6
Sample A Female 6.4
Sample B Female 5.8
Sample C Male 5.6
Sample D Male 6.9
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 8.1
Sample C Male 6.9
Sample D Male 8.1
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.1
Min nTPM: 6.2
Sample B Female 6.9
Sample C Male 6.2
Sample D Male 7.1
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 5.8
Sample D Male 6.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org