MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA Brain:63.1 nTPM
GTEx:15.8 nTPM
FANTOM5:254.9 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:10.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.1
2411 Female, age 72, unknown 73.3
2019 Male, age 18, unknown 65.8
1833 Male, age 53, unknown 65.2
1830 Male, age 51, unknown 64.6
1870 Female, age 42, unknown 60.7
2219 Male, age 76, both hemispheres 52.0
1827 Male, age 72, unknown 51.0
2828 Female, age 72, unknown 50.1
2666 Male, age 74, left hemisphere 36.9
2586 Male, age 75, left hemisphere 31.7
Dorsal raphe nucleus
nTPM: 51.9
2750 Male, age 76, both hemispheres 69.2
2016 Female, age 72, unknown 57.5
2298 Female, age 72, unknown 50.1
1828 Male, age 53, unknown 45.4
2047 Male, age 72, unknown 37.6
Inferior colliculus
nTPM: 48.8
1848 Female, age 42, unknown 51.9
2849 Male, age 72, unknown 50.3
2097 Female, age 72, unknown 48.6
1890 Male, age 53, unknown 44.4
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Periaquaductal grey, anterior
nTPM: 46.5
2502 Female, age 75, unknown 57.6
1947 Male, age 18, unknown 43.2
1795 Male, age 51, unknown 38.8
Periaquaductal grey, dorsal
nTPM: 46.2
2464 Female, age 72, unknown 62.8
1840 Male, age 53, unknown 45.1
1831 Male, age 72, unknown 40.4
2850 Male, age 76, both hemispheres 36.4
Periaquaductal grey, lateral
nTPM: 49.8
2272 Male, age 74, both hemispheres 60.6
2053 Male, age 18, unknown 45.8
2140 Male, age 76, both hemispheres 43.2
Pretectal area
nTPM: 50.1
2273 Male, age 74, both hemispheres 62.9
2667 Female, age 75, unknown 62.8
2316 Male, age 76, right hemisphere 62.1
1815 Male, age 53, unknown 52.3
2224 Female, age 72, unknown 50.4
2825 Male, age 18, unknown 47.2
2007 Male, age 72, unknown 46.4
2407 Male, age 75, both hemispheres 45.9
1817 Female, age 42, unknown 43.5
1944 Female, age 72, unknown 41.0
1816 Male, age 51, unknown 36.2
Red nucleus
nTPM: 63.1
1865 Male, age 51, unknown 75.5
1904 Male, age 53, unknown 74.5
2503 Female, age 72, unknown 73.3
2227 Male, age 72, unknown 69.1
2823 Male, age 76, right hemisphere 67.7
2785 Male, age 18, unknown 67.3
2769 Male, age 72, unknown 66.9
1821 Female, age 72, unknown 64.1
1954 Female, age 42, unknown 62.5
2588 Male, age 74, left hemisphere 52.4
2725 Female, age 75, unknown 42.5
2584 Male, age 75, left hemisphere 41.7
Substantia nigra
nTPM: 44.1
2409 Female, age 72, unknown 61.4
1851 Male, age 51, unknown 49.2
1889 Female, age 72, unknown 47.3
2583 Male, age 75, right hemisphere 47.0
2241 Male, age 72, unknown 44.3
2699 Male, age 18, unknown 43.5
2590 Female, age 75, unknown 43.2
1941 Male, age 53, unknown 43.0
1916 Female, age 42, unknown 33.9
2665 Male, age 74, both hemispheres 28.2
Superior colliculus
nTPM: 53.9
1895 Male, age 76, right hemisphere 73.0
1913 Female, age 42, unknown 70.7
1995 Male, age 72, unknown 68.6
2587 Male, age 74, left hemisphere 62.2
1839 Male, age 51, unknown 54.0
2668 Female, age 75, unknown 47.4
1796 Male, age 53, unknown 46.7
2261 Male, age 18, unknown 46.2
2087 Female, age 72, unknown 43.7
2664 Male, age 75, both hemispheres 26.1
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 68.1
2223 Female, age 72, unknown 47.1
1915 Female, age 42, unknown 44.5
1942 Male, age 51, unknown 43.3
2021 Male, age 53, unknown 41.5
2218 Male, age 76, both hemispheres 41.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 42.3
Min nTPM: 5.5
Std nTPM: 6.9
Median nTPM: 13.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 39.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 31.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 30.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 28.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 254.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 254.9
FF:10158-103A5 76 years, female 254.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 32.0
Min nTPM: 22.1
Sample A Female 23.0
Sample B Female 22.1
Sample C Male 24.7
Sample D Male 32.0
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 34.9
Min nTPM: 23.1
Sample A Female 34.9
Sample B Female 32.4
Sample C Male 23.1
Sample D Male 25.7
Periaqueductal gray
nTPM: 30.2
Samples: 3

Max nTPM: 32.3
Min nTPM: 28.2
Sample B Female 32.3
Sample C Male 28.2
Sample D Male 30.2
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 24.9
Min nTPM: 13.0
Sample A Female 21.4
Sample B Female 13.0
Sample C Male 24.5
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 9.9
Sample C Female 11.4
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74578218 Antisense, RP_060208_02_H07, Mouse strain C57BL/6J (56 days, male) 0.1

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