HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA Brain:71.7 nTPM
GTEx:35.9 nTPM
FANTOM5:44.2 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:55.4 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 71.7
Sample id Sample description nTPM
Hippocampus
nTPM: 54.4
1911 Female, age 85, right hemisphere 60.8
1898 Male, age 80, left hemisphere 57.5
2621 Female, age 67, right hemisphere 57.3
1855 Male, age 76, left hemisphere 53.6
2148 Female, age 91, left hemisphere 50.8
2529 Female, age 94, left hemisphere 46.4
Dentate gyrus
nTPM: 71.7
2530 Female, age 94, left hemisphere 115.6
2010 Male, age 76, both hemispheres 91.1
2528 Male, age 74, both hemispheres 67.5
1927 Female, age 91, both hemispheres 56.7
2246 Female, age 85, both hemispheres 55.0
2531 Female, age 67, both hemispheres 44.4
Entorhinal gyrus
nTPM: 51.8
2764 Male, age 80, right hemisphere 62.6
1787 Male, age 76, left hemisphere 57.7
2117 Female, age 91, right hemisphere 54.3
1938 Female, age 85, left hemisphere 49.3
2613 Female, age 94, left hemisphere 43.6
2686 Male, age 75, right hemisphere 43.1
Hippocampus, CA1
nTPM: 60.9
1873 Female, age 85, both hemispheres 75.2
2749 Male, age 80, left hemisphere 72.0
2045 Male, age 76, both hemispheres 69.8
2527 Male, age 74, both hemispheres 48.5
2082 Female, age 91, right hemisphere 39.1
Hippocampus, CA2
nTPM: 60.7
1963 Male, age 80, left hemisphere 80.3
2249 Male, age 74, both hemispheres 79.0
2437 Female, age 94, left hemisphere 64.7
1892 Male, age 76, both hemispheres 52.4
1940 Female, age 85, left hemisphere 48.3
2113 Female, age 91, right hemisphere 39.5
Hippocampus, CA3
nTPM: 49.4
2436 Male, age 74, both hemispheres 59.9
1891 Female, age 85, both hemispheres 59.4
1867 Male, age 76, both hemispheres 52.0
2861 Female, age 67, both hemispheres 46.6
2620 Female, age 94, left hemisphere 45.2
2137 Male, age 80, left hemisphere 33.1
Parahippocampal cortex
nTPM: 46.6
1933 Female, age 85, both hemispheres 58.7
2532 Female, age 72, left hemisphere 54.0
1990 Female, age 91, right hemisphere 50.9
2018 Male, age 76, both hemispheres 47.2
2622 Female, age 67, right hemisphere 46.8
2692 Male, age 74, both hemispheres 45.5
2693 Female, age 94, both hemispheres 42.8
1850 Male, age 80, both hemispheres 41.3
2250 Female, age 67, right hemisphere 40.5
2245 Female, age 91, both hemispheres 37.8
Perirhinal gyrus
nTPM: 42.3
2521 Female, age 94, right hemisphere 45.1
2848 Male, age 76, right hemisphere 44.8
1794 Male, age 80, right hemisphere 42.4
1847 Female, age 91, left hemisphere 40.0
1841 Female, age 85, right hemisphere 39.3
Subiculum
nTPM: 57.2
2042 Male, age 76, both hemispheres 83.5
1977 Female, age 85, both hemispheres 67.0
1901 Male, age 80, both hemispheres 55.7
2438 Female, age 94, left hemisphere 49.2
2619 Male, age 74, both hemispheres 46.3
2729 Female, age 91, right hemisphere 41.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.9
Samples: 197

Max nTPM: 159.7
Min nTPM: 11.3
Std nTPM: 20.3
Median nTPM: 30.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 159.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 122.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 122.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 90.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 84.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 82.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 82.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 81.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 76.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 75.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 72.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.2
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 42.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Subiculum
nTPM: 14.0
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.4
Sample A Female 17.3
Sample B Female 14.6
Sample C Male 12.7
Sample D Male 11.4
Dorsal hippocampus
nTPM: 15.0
Samples: 4

Max nTPM: 21.0
Min nTPM: 10.9
Sample A Female 21.0
Sample B Female 13.2
Sample C Male 14.9
Sample D Male 10.9
Entorhinal cortex
nTPM: 11.4
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.2
Sample A Female 12.1
Sample B Female 12.3
Sample C Male 11.9
Sample D Male 9.2
Ventral hippocampus
nTPM: 15.8
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.1
Sample A Female 16.7
Sample B Female 13.1
Sample C Male 18.4
Sample D Male 14.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.4
Samples: 4

Max nTPM: 64.8
Min nTPM: 43.7
Sample A Male 64.8
Sample B Male 62.2
Sample C Female 43.7
Sample D Female 50.7
Hippocampal formation
nTPM: 47.8
Samples: 4

Max nTPM: 55.0
Min nTPM: 43.2
Sample A Male 55.0
Sample B Male 46.8
Sample C Female 43.2
Sample D Female 46.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
69735473 Antisense, RP_050503_02_H07, Mouse strain C57BL/6J (56 days, male) 2.1
75041453 Antisense, RP_060412_04_B07, Mouse strain C57BL/6J (56 days, male) 1.7

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