MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:118.7 nTPM
GTEx:28.0 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:94.3 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 118.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.2
2411 Female, age 72, unknown 118.1
1870 Female, age 42, unknown 90.3
1833 Male, age 53, unknown 87.9
1830 Male, age 51, unknown 85.6
2828 Female, age 72, unknown 82.1
1827 Male, age 72, unknown 81.2
2586 Male, age 75, left hemisphere 71.2
2219 Male, age 76, both hemispheres 65.2
2666 Male, age 74, left hemisphere 61.0
2019 Male, age 18, unknown 49.9
Dorsal raphe nucleus
nTPM: 106.1
2298 Female, age 72, unknown 135.3
2047 Male, age 72, unknown 119.3
2750 Male, age 76, both hemispheres 116.2
1828 Male, age 53, unknown 86.9
2016 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 64.4
1848 Female, age 42, unknown 73.5
2849 Male, age 72, unknown 67.6
1890 Male, age 53, unknown 58.2
2097 Female, age 72, unknown 58.2
Median raphe nucleus
nTPM: 118.7
2220 Male, age 76, midline 118.7
Periaquaductal grey, anterior
nTPM: 111.8
2502 Female, age 75, unknown 130.2
1947 Male, age 18, unknown 114.5
1795 Male, age 51, unknown 90.7
Periaquaductal grey, dorsal
nTPM: 77.3
2850 Male, age 76, both hemispheres 94.9
2464 Female, age 72, unknown 81.1
1840 Male, age 53, unknown 71.6
1831 Male, age 72, unknown 61.7
Periaquaductal grey, lateral
nTPM: 81.6
2053 Male, age 18, unknown 87.7
2140 Male, age 76, both hemispheres 81.9
2272 Male, age 74, both hemispheres 75.2
Pretectal area
nTPM: 76.1
2667 Female, age 75, unknown 119.3
2825 Male, age 18, unknown 97.8
2407 Male, age 75, both hemispheres 87.0
2224 Female, age 72, unknown 80.7
2316 Male, age 76, right hemisphere 75.9
2273 Male, age 74, both hemispheres 72.4
1815 Male, age 53, unknown 72.2
2007 Male, age 72, unknown 66.7
1816 Male, age 51, unknown 59.7
1817 Female, age 42, unknown 59.2
1944 Female, age 72, unknown 46.1
Red nucleus
nTPM: 72.4
1865 Male, age 51, unknown 83.5
2588 Male, age 74, left hemisphere 79.1
1821 Female, age 72, unknown 78.3
2503 Female, age 72, unknown 76.6
2769 Male, age 72, unknown 76.0
1904 Male, age 53, unknown 74.9
2227 Male, age 72, unknown 74.1
1954 Female, age 42, unknown 72.1
2725 Female, age 75, unknown 69.7
2785 Male, age 18, unknown 66.1
2823 Male, age 76, right hemisphere 63.8
2584 Male, age 75, left hemisphere 55.0
Substantia nigra
nTPM: 57.1
1916 Female, age 42, unknown 89.8
1941 Male, age 53, unknown 71.9
2241 Male, age 72, unknown 62.0
1889 Female, age 72, unknown 60.8
1851 Male, age 51, unknown 59.4
2583 Male, age 75, right hemisphere 56.2
2699 Male, age 18, unknown 52.3
2409 Female, age 72, unknown 43.1
2665 Male, age 74, both hemispheres 42.9
2590 Female, age 75, unknown 32.4
Superior colliculus
nTPM: 74.6
2261 Male, age 18, unknown 88.8
1839 Male, age 51, unknown 86.9
1796 Male, age 53, unknown 82.2
2587 Male, age 74, left hemisphere 78.7
1895 Male, age 76, right hemisphere 74.2
1913 Female, age 42, unknown 74.2
2664 Male, age 75, both hemispheres 72.8
2668 Female, age 75, unknown 67.8
1995 Male, age 72, unknown 64.9
2087 Female, age 72, unknown 56.0
Ventral tegmental area
nTPM: 81.7
2223 Female, age 72, unknown 107.1
2410 Female, age 72, unknown 89.7
1915 Female, age 42, unknown 77.1
1942 Male, age 51, unknown 74.9
2218 Male, age 76, both hemispheres 74.3
2021 Male, age 53, unknown 67.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 110.8
Min nTPM: 8.3
Std nTPM: 16.2
Median nTPM: 24.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 110.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 94.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 63.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 58.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 58.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 56.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 54.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 54.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 50.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.4
Samples: 4

Max nTPM: 38.1
Min nTPM: 20.1
Sample A Female 38.1
Sample B Female 20.1
Sample C Male 25.1
Sample D Male 30.4
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 50.7
Min nTPM: 18.0
Sample A Female 50.7
Sample B Female 28.0
Sample C Male 19.1
Sample D Male 18.0
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 25.9
Min nTPM: 20.7
Sample B Female 25.9
Sample C Male 25.6
Sample D Male 20.7
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 24.9
Min nTPM: 13.7
Sample A Female 24.9
Sample B Female 13.7
Sample C Male 20.3
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.3
Samples: 4

Max nTPM: 105.1
Min nTPM: 81.0
Sample A Male 105.1
Sample B Male 102.9
Sample C Female 81.0
Sample D Female 88.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69735473 Antisense, RP_050503_02_H07, Mouse strain C57BL/6J (56 days, male) 3.6
75041453 Antisense, RP_060412_04_B07, Mouse strain C57BL/6J (56 days, male) 2.5

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